Wall clock time and date at job start Mon Mar 30 2020 03:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 126.05092 * 2 1 4 4 C 1.41125 * 134.81347 * 359.97438 * 3 2 1 5 5 C 1.35659 * 119.53600 * 179.97438 * 4 3 2 6 6 C 1.39684 * 121.72317 * 0.02562 * 5 4 3 7 7 C 1.35630 * 121.81950 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.20410 * 179.97438 * 7 6 5 9 9 C 1.41162 * 119.59539 * 0.02562 * 7 6 5 10 10 N 1.32061 * 134.68055 * 180.36245 * 9 7 6 11 11 N 1.33992 * 126.04023 * 179.97438 * 2 1 3 12 12 C 1.46491 * 125.02764 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99932 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08999 * 109.47032 * 270.01462 * 1 2 3 22 22 H 1.09004 * 109.47307 * 30.01208 * 1 2 3 23 23 H 1.09002 * 109.47479 * 150.02046 * 1 2 3 24 24 H 1.08001 * 120.23861 * 359.95092 * 4 3 2 25 25 H 1.08002 * 119.13589 * 180.02562 * 5 4 3 26 26 H 1.08004 * 119.08818 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46741 * 270.02261 * 8 7 6 28 28 H 1.08997 * 109.46719 * 30.02067 * 8 7 6 29 29 H 1.09000 * 109.46763 * 150.02092 * 8 7 6 30 30 H 1.09004 * 109.47166 * 330.00198 * 12 11 2 31 31 H 1.08994 * 109.47507 * 209.99904 * 12 11 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1177 0.0000 4 6 2.0964 2.5110 -0.0004 5 6 3.1556 3.3587 0.0002 6 6 4.4714 2.8900 0.0009 7 6 4.7584 1.5644 0.0013 8 6 6.1918 1.0989 0.0014 9 6 3.7062 0.6233 0.0006 10 7 3.6401 -0.6956 0.0067 11 7 2.2953 -1.0835 0.0005 12 6 1.8200 -2.4691 0.0006 13 6 1.6575 -2.9445 -1.4203 14 1 1.8859 -2.2810 -2.2412 15 6 1.2233 -4.2287 -1.6722 16 7 0.9455 -5.0369 -0.6725 17 14 1.0293 -4.8204 -3.4333 18 1 2.3389 -4.7417 -4.1290 19 1 0.5520 -6.2267 -3.4332 20 1 0.0422 -3.9633 -4.1377 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8899 -0.5140 23 1 -0.3634 -0.8902 -0.5135 24 1 1.0889 2.8999 -0.0017 25 1 2.9767 4.4238 0.0003 26 1 5.2828 3.6029 0.0010 27 1 6.5373 0.9868 -1.0262 28 1 6.8121 1.8332 0.5152 29 1 6.2624 0.1403 0.5152 30 1 0.8601 -2.5240 0.5140 31 1 2.5437 -3.1015 0.5147 32 1 0.6397 -5.9402 -0.8497 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:02 Heat of formation + Delta-G solvation = 72.213163 kcal Electronic energy + Delta-G solvation = -15366.504707 eV Core-core repulsion = 12906.805334 eV Total energy + Delta-G solvation = -2459.699373 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.64855 -37.07722 -33.56232 -33.02296 -31.38895 -30.58816 -27.43556 -26.59943 -25.81868 -23.82997 -21.36424 -20.94651 -18.38474 -16.85201 -16.45693 -15.82575 -15.04318 -14.64685 -14.48681 -13.59172 -13.17735 -13.15592 -12.64264 -12.61097 -12.17787 -12.12207 -11.86331 -11.60351 -11.29116 -11.10033 -10.89219 -10.84731 -10.83214 -10.36033 -9.83267 -9.54430 -9.23468 -8.74348 -7.88920 -6.87671 -6.37005 -4.45772 1.26126 2.36572 3.07577 3.17619 3.21838 3.25578 3.38332 4.21316 4.34788 4.85128 4.98552 5.09374 5.36430 5.44516 5.54842 5.67596 5.90009 5.90094 5.98646 6.04303 6.10004 6.17013 6.25352 6.43681 6.64961 6.81030 6.87637 7.02254 7.06384 7.18077 7.52608 7.55946 7.72338 7.77467 8.48672 8.60592 9.21257 10.70817 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.006983 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.009305 B = 4008.502620 C = 4361.539248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.104 3.896 3 C -0.224 4.224 4 C -0.037 4.037 5 C -0.177 4.177 6 C -0.097 4.097 7 C -0.070 4.070 8 C -0.104 4.104 9 C 0.088 3.912 10 N -0.308 5.308 11 N -0.269 5.269 12 C 0.244 3.756 13 C -0.541 4.541 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 11.927 1.692 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.234 4.234 4 C -0.057 4.057 5 C -0.197 4.197 6 C -0.119 4.119 7 C -0.074 4.074 8 C -0.161 4.161 9 C -0.065 4.065 10 N -0.136 5.136 11 N -0.042 5.042 12 C 0.127 3.873 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.736 3.264 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.131 0.869 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.654 10.381 1.757 10.658 hybrid contribution -0.592 0.210 -0.937 1.128 sum 1.063 10.591 0.820 10.676 Atomic orbital electron populations 1.20458 0.87177 1.04370 1.02925 1.21193 0.94521 0.87048 1.00913 1.19283 0.92471 0.93595 1.18053 1.20112 0.98224 0.90426 0.96951 1.20240 0.92430 0.98653 1.08345 1.20298 0.96466 0.94038 1.01133 1.18595 0.93110 0.91364 1.04297 1.20638 0.92072 1.01543 1.01833 1.20724 0.93583 0.91348 1.00796 1.77716 0.95198 1.11036 1.29633 1.49476 1.03068 1.08548 1.43063 1.19954 0.96180 0.71473 0.99683 1.21188 1.47219 0.98814 0.90752 0.91619 1.24925 0.94388 0.95864 0.98395 1.69907 1.43831 1.07641 1.31223 0.86360 0.78930 0.77780 0.83349 1.19836 1.20793 1.19824 0.90579 0.90343 0.89373 0.86927 0.87083 0.86744 0.91778 0.92153 0.91518 0.92359 0.92268 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.83 36.00 0.35 -1.10 16 2 C 0.10 2.13 6.98 -81.65 -0.57 1.56 16 3 C -0.22 -4.45 6.26 -105.20 -0.66 -5.11 16 4 C -0.04 -0.59 10.09 -39.41 -0.40 -0.99 16 5 C -0.18 -2.61 9.90 -39.96 -0.40 -3.00 16 6 C -0.10 -1.48 9.53 -39.97 -0.38 -1.86 16 7 C -0.07 -1.25 5.89 -104.44 -0.62 -1.87 16 8 C -0.10 -1.57 10.03 36.01 0.36 -1.21 16 9 C 0.09 1.88 7.19 -83.05 -0.60 1.28 16 10 N -0.31 -7.41 12.54 33.26 0.42 -6.99 16 11 N -0.27 -6.34 3.53 -57.79 -0.20 -6.55 16 12 C 0.24 6.14 5.69 -5.20 -0.03 6.11 16 13 C -0.54 -14.64 9.39 -34.44 -0.32 -14.97 16 14 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 17 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.09 1.52 7.60 -51.93 -0.39 1.13 16 24 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 25 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.06 1.42 7.51 -51.93 -0.39 1.03 16 31 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -29.85 280.61 -7.32 -37.17 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -4.13 Total: -0.46 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.35 Total: -19.41 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.95 Total: -37.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.85 -7.32 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.382 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds