Wall clock time and date at job start Mon Mar 30 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 126.05092 * 2 1 4 4 C 1.41125 * 134.81347 * 359.97438 * 3 2 1 5 5 C 1.35659 * 119.53600 * 179.97438 * 4 3 2 6 6 C 1.39684 * 121.72317 * 0.02562 * 5 4 3 7 7 C 1.35630 * 121.81950 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.20410 * 179.97438 * 7 6 5 9 9 C 1.41162 * 119.59539 * 0.02562 * 7 6 5 10 10 N 1.32061 * 134.68055 * 180.36245 * 9 7 6 11 11 N 1.33992 * 126.04023 * 179.97438 * 2 1 3 12 12 C 1.46491 * 125.02764 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 89.99932 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08999 * 109.47032 * 270.01462 * 1 2 3 22 22 H 1.09004 * 109.47307 * 30.01208 * 1 2 3 23 23 H 1.09002 * 109.47479 * 150.02046 * 1 2 3 24 24 H 1.08001 * 120.23861 * 359.95092 * 4 3 2 25 25 H 1.08002 * 119.13589 * 180.02562 * 5 4 3 26 26 H 1.08004 * 119.08818 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46741 * 270.02261 * 8 7 6 28 28 H 1.08997 * 109.46719 * 30.02067 * 8 7 6 29 29 H 1.09000 * 109.46763 * 150.02092 * 8 7 6 30 30 H 1.09004 * 109.47166 * 330.00198 * 12 11 2 31 31 H 1.08994 * 109.47507 * 209.99904 * 12 11 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3205 1.1177 0.0000 4 6 2.0964 2.5110 -0.0004 5 6 3.1556 3.3587 0.0002 6 6 4.4714 2.8900 0.0009 7 6 4.7584 1.5644 0.0013 8 6 6.1918 1.0989 0.0014 9 6 3.7062 0.6233 0.0006 10 7 3.6401 -0.6956 0.0067 11 7 2.2953 -1.0835 0.0005 12 6 1.8200 -2.4691 0.0006 13 6 1.6575 -2.9445 -1.4203 14 1 1.8859 -2.2810 -2.2412 15 6 1.2233 -4.2287 -1.6722 16 7 0.9455 -5.0369 -0.6725 17 14 1.0293 -4.8204 -3.4333 18 1 2.3389 -4.7417 -4.1290 19 1 0.5520 -6.2267 -3.4332 20 1 0.0422 -3.9633 -4.1377 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8899 -0.5140 23 1 -0.3634 -0.8902 -0.5135 24 1 1.0889 2.8999 -0.0017 25 1 2.9767 4.4238 0.0003 26 1 5.2828 3.6029 0.0010 27 1 6.5373 0.9868 -1.0262 28 1 6.8121 1.8332 0.5152 29 1 6.2624 0.1403 0.5152 30 1 0.8601 -2.5240 0.5140 31 1 2.5437 -3.1015 0.5147 32 1 0.6397 -5.9402 -0.8497 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:01 Heat of formation + Delta-G solvation = 55.032776 kcal Electronic energy + Delta-G solvation = -15367.249705 eV Core-core repulsion = 12906.805334 eV Total energy + Delta-G solvation = -2460.444371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.16626 -38.45371 -35.52475 -34.38942 -33.05174 -32.01434 -29.14642 -28.02085 -27.15229 -25.65621 -22.86897 -22.42185 -19.81771 -18.90666 -17.90757 -17.47710 -16.51090 -16.25198 -16.03786 -15.09860 -14.60346 -14.50785 -14.23736 -13.95208 -13.80962 -13.53692 -13.23611 -13.11649 -12.93789 -12.73427 -12.40664 -12.34698 -12.24398 -12.19635 -11.67230 -11.02504 -10.80108 -10.73274 -9.41730 -8.42712 -8.29041 -6.59859 -0.11131 1.02319 1.33833 1.36450 1.44298 1.59890 1.74204 2.29459 2.89291 3.01464 3.43152 3.72766 4.10572 4.20224 4.23605 4.51402 4.61700 4.66578 4.69255 4.75828 4.82376 4.82517 4.90885 5.03384 5.08837 5.15743 5.40709 5.48970 5.68532 5.73974 5.77293 5.83331 6.08108 6.26857 6.49889 6.93169 7.11454 8.65541 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.006983 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.009305 B = 4008.502620 C = 4361.539248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.098 3.902 3 C -0.241 4.241 4 C -0.044 4.044 5 C -0.168 4.168 6 C -0.077 4.077 7 C -0.108 4.108 8 C -0.098 4.098 9 C 0.068 3.932 10 N -0.367 5.367 11 N -0.301 5.301 12 C 0.263 3.737 13 C -0.558 4.558 14 H 0.049 0.951 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.973 3.027 18 H -0.277 1.277 19 H -0.269 1.269 20 H -0.262 1.262 21 H 0.098 0.902 22 H 0.111 0.889 23 H 0.068 0.932 24 H 0.148 0.852 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 14.958 1.000 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.251 4.251 4 C -0.064 4.064 5 C -0.187 4.187 6 C -0.099 4.099 7 C -0.111 4.111 8 C -0.155 4.155 9 C -0.084 4.084 10 N -0.195 5.195 11 N -0.074 5.074 12 C 0.144 3.856 13 C -0.596 4.596 14 H 0.067 0.933 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.796 3.204 18 H -0.203 1.203 19 H -0.194 1.194 20 H -0.186 1.186 21 H 0.117 0.883 22 H 0.130 0.870 23 H 0.087 0.913 24 H 0.165 0.835 25 H 0.173 0.827 26 H 0.174 0.826 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.129 13.433 1.075 13.523 hybrid contribution -0.376 -0.518 -0.669 0.926 sum 0.752 12.915 0.407 12.943 Atomic orbital electron populations 1.20602 0.84329 1.04997 1.04548 1.21998 0.96352 0.86452 0.99419 1.19743 0.91551 0.95291 1.18486 1.20547 1.00727 0.88552 0.96623 1.20821 0.91630 1.00732 1.05548 1.20864 0.98271 0.93426 0.97323 1.19037 0.93428 0.92059 1.06586 1.20615 0.91534 1.01269 1.02085 1.21417 0.95816 0.91028 1.00142 1.77580 0.95931 1.13171 1.32786 1.49225 1.03609 1.08348 1.46173 1.19451 0.94997 0.72716 0.98436 1.21304 1.47870 0.99259 0.91198 0.93280 1.25743 0.93654 0.95675 1.02501 1.69989 1.44046 1.08051 1.33171 0.85386 0.78754 0.77938 0.78329 1.20298 1.19385 1.18649 0.88335 0.87025 0.91257 0.83477 0.82683 0.82649 0.91612 0.88686 0.94056 0.92316 0.95672 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 9.83 71.23 0.70 -2.00 16 2 C 0.10 4.04 6.98 42.23 0.29 4.34 16 3 C -0.24 -9.40 6.26 -20.24 -0.13 -9.53 16 4 C -0.04 -1.28 10.09 22.38 0.23 -1.05 16 5 C -0.17 -4.12 9.90 22.02 0.22 -3.90 16 6 C -0.08 -2.03 9.53 22.01 0.21 -1.82 16 7 C -0.11 -3.72 5.89 -19.75 -0.12 -3.83 16 8 C -0.10 -2.90 10.03 71.24 0.71 -2.19 16 9 C 0.07 2.97 7.19 42.16 0.30 3.27 16 10 N -0.37 -18.73 12.54 -48.70 -0.61 -19.35 16 11 N -0.30 -14.98 3.53 -336.75 -1.19 -16.17 16 12 C 0.26 14.09 5.69 85.64 0.49 14.58 16 13 C -0.56 -31.60 9.39 25.60 0.24 -31.36 16 14 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 15 C 0.03 1.42 5.46 84.66 0.46 1.89 16 16 N -0.92 -51.63 13.29 21.45 0.28 -51.34 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 23 H 0.07 2.42 7.60 -2.39 -0.02 2.40 16 24 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 25 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 26 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 29 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 30 H 0.06 3.05 7.51 -2.38 -0.02 3.03 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.28 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -68.88 280.61 5.23 -63.65 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.10 Total: 9.78 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.61 Total: -31.61 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.52 Total: -86.86 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -68.88 5.23 -63.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.686 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds