Wall clock time and date at job start Mon Mar 30 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38248 * 126.04375 * 2 1 4 4 C 1.41124 * 134.81346 * 0.03884 * 3 2 1 5 5 C 1.35661 * 119.53465 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.14068 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46984 * 89.99800 * 6 5 4 8 8 H 1.07998 * 120.00167 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99681 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99688 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00351 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47009 * 89.99875 * 11 9 7 13 13 H 1.48496 * 109.47643 * 209.99990 * 11 9 7 14 14 H 1.48504 * 109.47161 * 330.00393 * 11 9 7 15 15 C 1.39687 * 121.72383 * 359.97438 * 5 4 3 16 16 C 1.35644 * 121.81368 * 0.27616 * 15 5 4 17 17 C 1.41150 * 119.59609 * 359.46790 * 16 15 5 18 18 N 1.32064 * 134.67975 * 180.20089 * 17 16 15 19 19 N 1.33981 * 126.04895 * 180.02562 * 2 1 3 20 20 C 1.46507 * 125.02090 * 359.97438 * 19 2 1 21 21 H 1.08995 * 109.47240 * 269.95364 * 1 2 3 22 22 H 1.09000 * 109.46989 * 29.95738 * 1 2 3 23 23 H 1.09003 * 109.46469 * 149.95428 * 1 2 3 24 24 H 1.08000 * 120.23562 * 359.95959 * 4 3 2 25 25 H 1.09000 * 109.47418 * 209.99957 * 6 5 4 26 26 H 1.09003 * 109.47118 * 330.00388 * 6 5 4 27 27 H 0.97006 * 119.99744 * 180.02562 * 10 9 7 28 28 H 1.07995 * 119.08953 * 179.97438 * 15 5 4 29 29 H 1.07998 * 120.19854 * 179.68234 * 16 15 5 30 30 H 1.08992 * 109.47248 * 270.01960 * 20 19 2 31 31 H 1.08999 * 109.47021 * 30.02562 * 20 19 2 32 32 H 1.09003 * 109.46794 * 150.02399 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3205 1.1178 0.0000 4 6 2.0963 2.5111 0.0007 5 6 3.1554 3.3589 0.0010 6 6 2.9057 4.8450 0.0011 7 6 2.8222 5.3402 1.4220 8 1 2.9387 4.6481 2.2428 9 6 2.5970 6.6770 1.6741 10 7 2.5246 7.1092 2.9140 11 14 2.3947 7.8740 0.2544 12 1 0.9605 7.9585 -0.1213 13 1 2.8786 9.2163 0.6658 14 1 3.1842 7.3988 -0.9102 15 6 4.4713 2.8904 0.0011 16 6 4.7583 1.5647 -0.0045 17 6 3.7063 0.6236 0.0006 18 7 3.6402 -0.6954 0.0008 19 7 2.2955 -1.0833 -0.0005 20 6 1.8202 -2.4691 -0.0006 21 1 -0.3633 -0.0008 1.0276 22 1 -0.3633 0.8904 -0.5132 23 1 -0.3632 -0.8896 -0.5146 24 1 1.0886 2.8998 0.0007 25 1 3.7232 5.3509 -0.5125 26 1 1.9678 5.0560 -0.5128 27 1 2.3658 8.0496 3.0914 28 1 5.2825 3.6033 0.0009 29 1 5.7855 1.2312 -0.0094 30 1 1.7024 -2.8128 1.0270 31 1 0.8605 -2.5240 -0.5145 32 1 2.5443 -3.1014 -0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201782.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:29 Heat of formation + Delta-G solvation = 63.524298 kcal Electronic energy + Delta-G solvation = -15153.038817 eV Core-core repulsion = 12692.962667 eV Total energy + Delta-G solvation = -2460.076151 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.24320 -38.71662 -35.29837 -34.19049 -33.12517 -32.02810 -30.11911 -27.78593 -27.37908 -24.37499 -23.55818 -21.83382 -20.35862 -18.90207 -17.93292 -17.36726 -16.71598 -16.48505 -15.77462 -15.27843 -14.85619 -14.63624 -14.18636 -13.95261 -13.91350 -13.63395 -13.39836 -13.35780 -12.95397 -12.51297 -12.42250 -12.16728 -11.78194 -11.71010 -11.44756 -11.11727 -10.86029 -10.73031 -9.42461 -8.31622 -8.22886 -6.28752 -0.25020 0.94254 1.40871 1.43148 1.49373 1.53653 1.55558 2.40778 2.98626 3.10141 3.27688 3.60894 4.03493 4.15181 4.20821 4.32869 4.36409 4.57536 4.62339 4.69144 4.73797 4.81500 4.92380 5.05534 5.14842 5.16782 5.38273 5.55986 5.60508 5.66631 6.00273 6.05821 6.11913 6.35191 6.69516 6.78173 7.34629 8.92594 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041313 B = 0.006180 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.585737 B = 4529.413320 C = 4830.696422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.108 3.892 3 C -0.229 4.229 4 C -0.055 4.055 5 C -0.108 4.108 6 C 0.028 3.972 7 C -0.517 4.517 8 H 0.024 0.976 9 C 0.006 3.994 10 N -0.953 5.953 11 Si 0.952 3.048 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.245 1.245 15 C -0.065 4.065 16 C -0.129 4.129 17 C 0.076 3.924 18 N -0.353 5.353 19 N -0.324 5.324 20 C 0.078 3.922 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.126 0.874 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 -17.061 -9.530 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.238 4.238 4 C -0.075 4.075 5 C -0.110 4.110 6 C -0.009 4.009 7 C -0.555 4.555 8 H 0.042 0.958 9 C -0.190 4.190 10 N -0.594 5.594 11 Si 0.775 3.225 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.168 1.168 15 C -0.087 4.087 16 C -0.150 4.150 17 C -0.075 4.075 18 N -0.182 5.182 19 N -0.100 5.100 20 C -0.061 4.061 21 H 0.115 0.885 22 H 0.110 0.890 23 H 0.127 0.873 24 H 0.144 0.856 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.710 -18.242 -9.432 21.069 hybrid contribution -0.153 1.566 0.204 1.586 sum -4.863 -16.676 -9.227 19.670 Atomic orbital electron populations 1.20707 0.83015 1.05953 1.04994 1.21754 0.96142 0.85820 0.99340 1.19667 0.92824 0.94390 1.16965 1.20131 0.98872 0.89822 0.98645 1.19535 0.93325 0.96352 1.01754 1.18597 0.97295 0.89758 0.95260 1.21236 1.48721 0.93570 0.91965 0.95760 1.25999 0.94235 1.00291 0.98492 1.70078 1.51676 1.16120 1.21493 0.85631 0.79662 0.77417 0.79802 1.18837 1.21088 1.16799 1.20774 0.96682 0.95141 0.96113 1.19950 0.97180 0.90719 1.07122 1.21140 0.95189 0.91409 0.99725 1.77515 0.95131 1.11641 1.33868 1.48776 1.03462 1.08114 1.49610 1.22495 1.02626 0.75358 1.05575 0.88544 0.88989 0.87263 0.85644 0.95082 0.95107 0.92484 0.85173 0.84323 0.88549 0.85477 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 10.09 71.24 0.72 -0.71 16 2 C 0.11 2.98 6.98 42.24 0.29 3.27 16 3 C -0.23 -8.49 6.26 -20.23 -0.13 -8.62 16 4 C -0.05 -2.20 9.66 22.38 0.22 -1.99 16 5 C -0.11 -4.80 5.03 -20.11 -0.10 -4.90 16 6 C 0.03 1.36 4.12 29.10 0.12 1.48 16 7 C -0.52 -30.52 9.65 25.60 0.25 -30.27 16 8 H 0.02 1.61 7.98 -2.91 -0.02 1.59 16 9 C 0.01 0.37 5.47 84.65 0.46 0.83 16 10 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 11 Si 0.95 44.10 27.47 68.60 1.88 45.98 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 15 C -0.06 -2.65 9.51 22.02 0.21 -2.44 16 16 C -0.13 -4.90 10.08 22.38 0.23 -4.67 16 17 C 0.08 2.98 7.49 42.16 0.32 3.29 16 18 N -0.35 -12.55 12.54 -48.71 -0.61 -13.16 16 19 N -0.32 -8.65 3.95 -354.32 -1.40 -10.05 16 20 C 0.08 1.02 11.17 127.77 1.43 2.45 16 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.11 0.91 6.95 -2.39 -0.02 0.89 16 24 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 25 H 0.03 1.46 7.13 -2.39 -0.02 1.44 16 26 H 0.03 1.41 7.48 -2.39 -0.02 1.40 16 27 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 28 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.13 0.70 6.90 -2.39 -0.02 0.69 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.89 275.68 5.24 -72.66 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.05 Total: 7.03 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 4.01 Total: -42.27 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.71 Total: -83.40 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -77.89 5.24 -72.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201782.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.180 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds