Wall clock time and date at job start Mon Mar 30 2020 03:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33516 * 125.68743 * 2 1 4 4 C 1.32563 * 109.15772 * 180.02562 * 3 2 1 5 5 C 1.40936 * 132.32488 * 180.02562 * 4 3 2 6 6 C 1.36021 * 119.32803 * 179.97438 * 5 4 3 7 7 C 1.40475 * 119.69122 * 0.02562 * 6 5 4 8 8 C 1.34946 * 120.30159 * 359.97438 * 7 6 5 9 9 N 1.36482 * 120.61112 * 0.02562 * 8 7 6 10 10 C 1.35109 * 125.68964 * 180.02562 * 2 1 3 11 11 C 1.50704 * 126.40778 * 0.02562 * 10 2 1 12 12 C 1.52992 * 109.47467 * 269.97898 * 11 10 2 13 13 C 1.50694 * 109.47469 * 179.97438 * 12 11 10 14 14 H 1.08009 * 119.99893 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00597 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99315 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00294 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46807 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46794 * 119.99699 * 17 15 13 20 20 H 1.48495 * 109.47130 * 239.99998 * 17 15 13 21 21 H 1.08996 * 109.47255 * 90.02159 * 1 2 3 22 22 H 1.09004 * 109.46728 * 210.02066 * 1 2 3 23 23 H 1.08999 * 109.46859 * 330.01527 * 1 2 3 24 24 H 1.08002 * 120.33408 * 0.02562 * 5 4 3 25 25 H 1.08001 * 120.15027 * 180.27471 * 6 5 4 26 26 H 1.07998 * 119.84613 * 180.02562 * 7 6 5 27 27 H 1.08002 * 119.69736 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46959 * 29.98502 * 11 10 2 29 29 H 1.09002 * 109.47220 * 149.97739 * 11 10 2 30 30 H 1.09001 * 109.47524 * 300.00258 * 12 11 10 31 31 H 1.09009 * 109.46963 * 60.00137 * 12 11 10 32 32 H 0.96997 * 119.99233 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0006 5 6 4.7629 1.4362 -0.0003 6 6 5.9465 0.7659 -0.0006 7 6 5.9505 -0.6389 -0.0015 8 6 4.7874 -1.3231 -0.0017 9 7 3.5928 -0.6630 -0.0015 10 6 2.2952 -1.0973 -0.0005 11 6 1.8319 -2.5314 -0.0017 12 6 1.6751 -3.0180 1.4403 13 6 1.2113 -4.4517 1.4391 14 1 1.0453 -4.9649 0.5033 15 6 0.9987 -5.1087 2.6326 16 7 1.2003 -4.4837 3.7721 17 14 0.4244 -6.8862 2.6311 18 1 0.2724 -7.3560 1.2305 19 1 1.4257 -7.7304 3.3310 20 1 -0.8819 -6.9850 3.3303 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5136 24 1 4.7476 2.5161 0.0008 25 1 6.8787 1.3111 0.0041 26 1 6.8888 -1.1737 -0.0013 27 1 4.8019 -2.4030 -0.0029 28 1 0.8734 -2.6031 -0.5157 29 1 2.5671 -3.1503 -0.5160 30 1 2.6337 -2.9462 1.9543 31 1 0.9398 -2.3990 1.9547 32 1 1.0504 -4.9457 4.6117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:01 Heat of formation + Delta-G solvation = 66.311425 kcal Electronic energy + Delta-G solvation = -15338.073210 eV Core-core repulsion = 12878.117918 eV Total energy + Delta-G solvation = -2459.955292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.45533 -37.28513 -34.34947 -33.17239 -31.93905 -30.53765 -28.55236 -27.02151 -25.04728 -22.66875 -22.24804 -20.91825 -19.76433 -17.01739 -16.56630 -16.27510 -15.54900 -15.37472 -14.56390 -14.49685 -13.24389 -13.08551 -12.83817 -12.56824 -12.32584 -12.28882 -11.69506 -11.61961 -11.30333 -11.07253 -11.01573 -10.75797 -10.55566 -10.13226 -9.76098 -9.54829 -9.16755 -8.42669 -8.28832 -7.27225 -6.06361 -4.10760 0.99879 1.59356 2.95910 3.22072 3.26761 3.34716 3.38259 3.80613 4.39892 4.47930 4.76246 5.01868 5.03766 5.26856 5.29167 5.61110 5.65717 5.68096 5.91303 6.05114 6.14415 6.17118 6.30420 6.36615 6.46715 6.57489 6.79700 6.83627 7.11656 7.47008 7.58688 7.69122 7.91941 8.26723 8.31106 8.96385 9.54115 11.04440 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.006695 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.269893 B = 4181.171665 C = 4736.516239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.046 3.954 3 N -0.493 5.493 4 C 0.204 3.796 5 C -0.082 4.082 6 C -0.110 4.110 7 C -0.160 4.160 8 C 0.074 3.926 9 N -0.360 5.360 10 C -0.028 4.028 11 C -0.039 4.039 12 C 0.030 3.970 13 C -0.524 4.524 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.136 0.864 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.012 0.988 31 H 0.022 0.978 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 7.723 -7.945 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 N -0.214 5.214 4 C -0.038 4.038 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.181 4.181 8 C -0.048 4.048 9 N -0.033 5.033 10 C -0.140 4.140 11 C -0.078 4.078 12 C -0.007 4.007 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.162 0.838 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.180 0.820 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.823 8.455 -7.758 13.350 hybrid contribution 0.166 -1.815 0.254 1.840 sum 6.989 6.640 -7.504 12.217 Atomic orbital electron populations 1.20135 0.87028 1.03459 1.02125 1.20638 0.96666 0.87371 1.03834 1.70542 0.98239 1.29648 1.22987 1.20797 0.94490 0.80548 1.08005 1.20146 0.88051 1.00078 1.01965 1.20911 0.97839 0.93983 1.00603 1.20685 0.97079 0.94655 1.05718 1.21692 0.83196 0.99304 1.00646 1.42687 1.05871 1.08644 1.46068 1.21712 0.80455 0.99231 1.12644 1.20348 1.00119 0.85094 1.02218 1.19082 0.97320 0.95838 0.88485 1.21235 1.45554 0.97011 0.92461 0.92411 1.25030 0.95454 0.98228 0.95608 1.69988 1.48953 1.36841 0.97318 0.86525 0.78438 0.84850 0.78139 1.19660 1.21020 1.20902 0.91404 0.89981 0.91229 0.83834 0.84601 0.83660 0.82036 0.90301 0.92531 0.96994 0.95985 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.03 36.00 0.36 -0.78 16 2 C 0.05 0.90 7.06 -82.97 -0.59 0.31 16 3 N -0.49 -9.87 11.32 -9.00 -0.10 -9.97 16 4 C 0.20 3.75 7.81 -156.04 -1.22 2.53 16 5 C -0.08 -1.16 10.11 -39.36 -0.40 -1.55 16 6 C -0.11 -1.27 10.07 -39.54 -0.40 -1.66 16 7 C -0.16 -1.93 9.99 -39.91 -0.40 -2.33 16 8 C 0.07 1.13 10.85 -16.65 -0.18 0.95 16 9 N -0.36 -6.68 2.94 -58.46 -0.17 -6.85 16 10 C -0.03 -0.55 6.29 -81.47 -0.51 -1.07 16 11 C -0.04 -0.81 5.18 -27.88 -0.14 -0.95 16 12 C 0.03 0.77 4.95 -27.89 -0.14 0.63 16 13 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 26 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.08 1.54 7.77 -51.93 -0.40 1.13 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -32.58 279.82 -8.52 -41.09 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.15 Total: -1.70 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -4.02 Total: -17.09 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.46 Total: -42.68 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.58 -8.52 -41.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.405 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds