Wall clock time and date at job start Mon Mar 30 2020 03:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33516 * 125.68743 * 2 1 4 4 C 1.32563 * 109.15772 * 180.02562 * 3 2 1 5 5 C 1.40936 * 132.32488 * 180.02562 * 4 3 2 6 6 C 1.36021 * 119.32803 * 179.97438 * 5 4 3 7 7 C 1.40475 * 119.69122 * 0.02562 * 6 5 4 8 8 C 1.34946 * 120.30159 * 359.97438 * 7 6 5 9 9 N 1.36482 * 120.61112 * 0.02562 * 8 7 6 10 10 C 1.35109 * 125.68964 * 180.02562 * 2 1 3 11 11 C 1.50704 * 126.40778 * 0.02562 * 10 2 1 12 12 C 1.52992 * 109.47467 * 269.97898 * 11 10 2 13 13 C 1.50694 * 109.47469 * 179.97438 * 12 11 10 14 14 H 1.08009 * 119.99893 * 0.02562 * 13 12 11 15 15 C 1.37884 * 120.00597 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99315 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00294 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46807 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46794 * 119.99699 * 17 15 13 20 20 H 1.48495 * 109.47130 * 239.99998 * 17 15 13 21 21 H 1.08996 * 109.47255 * 90.02159 * 1 2 3 22 22 H 1.09004 * 109.46728 * 210.02066 * 1 2 3 23 23 H 1.08999 * 109.46859 * 330.01527 * 1 2 3 24 24 H 1.08002 * 120.33408 * 0.02562 * 5 4 3 25 25 H 1.08001 * 120.15027 * 180.27471 * 6 5 4 26 26 H 1.07998 * 119.84613 * 180.02562 * 7 6 5 27 27 H 1.08002 * 119.69736 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46959 * 29.98502 * 11 10 2 29 29 H 1.09002 * 109.47220 * 149.97739 * 11 10 2 30 30 H 1.09001 * 109.47524 * 300.00258 * 12 11 10 31 31 H 1.09009 * 109.46963 * 60.00137 * 12 11 10 32 32 H 0.96997 * 119.99233 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2859 1.0844 0.0000 4 6 3.5567 0.7073 -0.0006 5 6 4.7629 1.4362 -0.0003 6 6 5.9465 0.7659 -0.0006 7 6 5.9505 -0.6389 -0.0015 8 6 4.7874 -1.3231 -0.0017 9 7 3.5928 -0.6630 -0.0015 10 6 2.2952 -1.0973 -0.0005 11 6 1.8319 -2.5314 -0.0017 12 6 1.6751 -3.0180 1.4403 13 6 1.2113 -4.4517 1.4391 14 1 1.0453 -4.9649 0.5033 15 6 0.9987 -5.1087 2.6326 16 7 1.2003 -4.4837 3.7721 17 14 0.4244 -6.8862 2.6311 18 1 0.2724 -7.3560 1.2305 19 1 1.4257 -7.7304 3.3310 20 1 -0.8819 -6.9850 3.3303 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8901 0.5136 24 1 4.7476 2.5161 0.0008 25 1 6.8787 1.3111 0.0041 26 1 6.8888 -1.1737 -0.0013 27 1 4.8019 -2.4030 -0.0029 28 1 0.8734 -2.6031 -0.5157 29 1 2.5671 -3.1503 -0.5160 30 1 2.6337 -2.9462 1.9543 31 1 0.9398 -2.3990 1.9547 32 1 1.0504 -4.9457 4.6117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:01 Heat of formation + Delta-G solvation = 47.820200 kcal Electronic energy + Delta-G solvation = -15338.875050 eV Core-core repulsion = 12878.117918 eV Total energy + Delta-G solvation = -2460.757132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.76661 -38.47374 -36.15029 -34.66534 -33.58798 -31.99194 -29.94051 -28.51396 -26.75257 -24.06570 -23.66709 -22.51820 -21.16589 -18.71241 -18.06093 -17.68265 -16.98280 -16.46893 -16.38912 -15.81026 -14.88887 -14.73570 -14.20510 -14.11256 -13.90602 -13.50577 -13.31208 -12.90365 -12.88417 -12.68844 -12.39631 -12.34857 -12.01687 -12.00029 -11.53646 -11.32246 -10.98249 -10.59775 -9.55992 -8.63095 -8.21219 -6.35014 -0.11701 0.37440 1.40462 1.41331 1.54560 1.69837 1.85341 2.40144 2.61650 3.11430 3.27795 3.59983 3.83706 4.03393 4.15753 4.21850 4.32228 4.52690 4.61944 4.71779 4.79730 4.94077 4.96860 5.04757 5.10848 5.19511 5.28613 5.44080 5.60832 5.68603 5.73752 5.79299 6.15579 6.21756 6.81648 6.89763 7.35362 8.89963 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.006695 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.269893 B = 4181.171665 C = 4736.516239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.033 3.967 3 N -0.530 5.530 4 C 0.195 3.805 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.135 4.135 8 C 0.031 3.969 9 N -0.367 5.367 10 C -0.069 4.069 11 C -0.018 4.018 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.279 1.279 20 H -0.279 1.279 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.167 0.833 25 H 0.187 0.813 26 H 0.190 0.810 27 H 0.164 0.836 28 H 0.086 0.914 29 H 0.064 0.936 30 H -0.021 1.021 31 H -0.011 1.011 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 7.524 -8.988 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 N -0.252 5.252 4 C -0.048 4.048 5 C -0.125 4.125 6 C -0.105 4.105 7 C -0.155 4.155 8 C -0.090 4.090 9 N -0.039 5.039 10 C -0.182 4.182 11 C -0.057 4.057 12 C 0.005 3.995 13 C -0.578 4.578 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.205 1.205 21 H 0.108 0.892 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.184 0.816 25 H 0.205 0.795 26 H 0.207 0.793 27 H 0.181 0.819 28 H 0.105 0.895 29 H 0.083 0.917 30 H -0.002 1.002 31 H 0.008 0.992 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.793 8.245 -8.820 14.936 hybrid contribution -0.222 -1.654 0.585 1.768 sum 8.571 6.591 -8.235 13.591 Atomic orbital electron populations 1.20161 0.85662 1.03096 1.03445 1.21101 0.97908 0.87515 1.03302 1.70518 0.99294 1.29928 1.25456 1.21592 0.95388 0.80955 1.06899 1.20626 0.87315 1.01378 1.03212 1.21555 0.98809 0.93833 0.96313 1.21346 0.97375 0.95298 1.01498 1.22193 0.83358 1.00108 1.03387 1.42811 1.06181 1.08998 1.45883 1.21510 0.81764 0.98688 1.16201 1.19973 1.00878 0.86077 0.98751 1.18859 0.94375 0.95063 0.91181 1.21666 1.45212 0.97901 0.93011 0.91380 1.26016 0.95430 1.03201 0.95106 1.70137 1.50226 1.39015 0.98120 0.85350 0.77830 0.78760 0.78812 1.18129 1.20481 1.20505 0.89175 0.91200 0.90575 0.81555 0.79539 0.79329 0.81854 0.89514 0.91737 1.00218 0.99213 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.25 10.03 71.24 0.71 -1.54 16 2 C 0.03 1.34 7.06 41.58 0.29 1.63 16 3 N -0.53 -21.73 11.32 -182.40 -2.06 -23.80 16 4 C 0.19 7.12 7.81 134.10 1.05 8.17 16 5 C -0.11 -2.71 10.11 22.42 0.23 -2.48 16 6 C -0.08 -1.51 10.07 22.30 0.22 -1.29 16 7 C -0.13 -2.74 9.99 22.06 0.22 -2.52 16 8 C 0.03 0.93 10.85 83.21 0.90 1.83 16 9 N -0.37 -13.78 2.94 -338.87 -1.00 -14.78 16 10 C -0.07 -2.88 6.29 41.06 0.26 -2.62 16 11 C -0.02 -0.78 5.18 29.85 0.15 -0.63 16 12 C 0.04 2.29 4.95 29.84 0.15 2.44 16 13 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 15 C 0.00 0.02 5.46 84.66 0.46 0.48 16 16 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 17 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.07 2.50 7.75 -2.39 -0.02 2.48 16 23 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 26 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 27 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 28 H 0.09 3.49 7.77 -2.39 -0.02 3.47 16 29 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 30 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 31 H -0.01 -0.63 8.14 -2.38 -0.02 -0.64 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -73.85 279.82 5.23 -68.62 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.10 Total: 7.84 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.89 Total: -26.54 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -2.78 Total: -95.56 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.85 5.23 -68.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.439 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds