Wall clock time and date at job start Mon Mar 30 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36660 * 120.11755 * 2 1 4 4 C 1.38795 * 120.52769 * 179.97438 * 3 2 1 5 5 C 1.37785 * 120.66790 * 0.02562 * 4 3 2 6 6 C 1.39082 * 119.77765 * 359.97438 * 5 4 3 7 7 N 1.37698 * 133.52125 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.05408 * 0.05961 * 7 6 5 9 9 C 1.36825 * 109.87766 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.94338 * 359.97438 * 9 7 6 11 11 C 1.50691 * 126.50541 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47453 * 219.97761 * 11 10 9 13 13 N 1.46904 * 109.46925 * 339.97889 * 11 10 9 14 14 C 1.50703 * 109.47080 * 99.97666 * 11 10 9 15 15 H 1.08005 * 120.00071 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99950 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00262 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00027 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46860 * 90.00012 * 18 16 14 20 20 H 1.48495 * 109.47039 * 209.99942 * 18 16 14 21 21 H 1.48498 * 109.46692 * 329.99928 * 18 16 14 22 22 C 1.39591 * 120.12155 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47708 * 90.00017 * 1 2 3 24 24 H 1.09005 * 109.47322 * 210.00483 * 1 2 3 25 25 H 1.09004 * 109.46997 * 329.99732 * 1 2 3 26 26 H 1.08005 * 119.73722 * 0.25193 * 3 2 1 27 27 H 1.08001 * 119.66330 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.11423 * 179.97438 * 5 4 3 29 29 H 1.08001 * 125.03091 * 180.02562 * 9 7 6 30 30 H 1.00900 * 111.00091 * 60.00132 * 13 11 10 31 31 H 1.00903 * 111.00083 * 183.95081 * 13 11 10 32 32 H 0.96999 * 120.00203 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1920 0.0005 5 6 4.2918 0.0120 0.0005 6 6 3.6145 -1.2028 0.0006 7 7 4.0248 -2.5172 0.0001 8 1 4.9488 -2.8125 0.0005 9 6 2.9351 -3.3447 -0.0002 10 6 1.8073 -2.6167 0.0006 11 6 0.3972 -3.1481 0.0000 12 1 -0.2205 -2.5387 -0.6596 13 7 0.3980 -4.5380 -0.4757 14 6 -0.1597 -3.0964 1.3994 15 1 0.4468 -2.7163 2.2083 16 6 -1.4433 -3.5344 1.6471 17 7 -2.1816 -3.9977 0.6624 18 14 -2.1334 -3.4710 3.3819 19 1 -2.8030 -2.1637 3.6008 20 1 -3.1178 -4.5679 3.5634 21 1 -1.0279 -3.6309 4.3604 22 6 2.2075 -1.2074 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6503 2.1161 0.0041 27 1 4.1083 2.1343 0.0001 28 1 5.3717 0.0301 0.0005 29 1 2.9762 -4.4239 -0.0002 30 1 0.9642 -5.1236 0.1197 31 1 -0.5426 -4.8964 -0.5466 32 1 -3.0848 -4.3054 0.8366 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261201928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:33 Heat of formation + Delta-G solvation = 45.440261 kcal Electronic energy + Delta-G solvation = -15790.312503 eV Core-core repulsion = 13329.452170 eV Total energy + Delta-G solvation = -2460.860333 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58715 -36.56529 -34.87124 -32.24702 -31.11888 -29.05430 -28.13959 -26.31291 -25.38724 -22.33758 -21.32748 -21.19062 -18.11548 -16.86475 -16.40411 -15.71960 -14.84134 -14.56506 -13.91542 -13.83785 -13.56308 -12.75710 -12.74189 -12.51745 -12.35493 -11.75319 -11.39018 -11.20283 -10.91896 -10.87375 -10.69055 -10.55453 -10.11025 -9.97827 -9.59727 -8.73973 -8.50947 -7.58117 -7.20565 -6.76579 -6.01341 -4.18600 1.74929 2.22005 3.25108 3.32463 3.35868 3.59692 3.78084 4.36614 4.52606 5.16660 5.29575 5.47757 5.56480 5.76045 5.92626 5.98777 6.25936 6.34085 6.41418 6.45572 6.61273 6.68382 6.95618 6.99266 7.07892 7.35098 7.42662 7.53934 7.80451 7.81448 7.89069 8.19950 8.24671 8.76100 9.01346 9.17044 9.52343 10.93201 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.009117 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.250405 B = 3070.360370 C = 3533.701467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.012 4.012 3 C -0.173 4.173 4 C -0.102 4.102 5 C -0.152 4.152 6 C 0.094 3.906 7 N -0.605 5.605 8 H 0.405 0.595 9 C 0.018 3.982 10 C -0.099 4.099 11 C 0.269 3.731 12 H 0.050 0.950 13 N -0.852 5.852 14 C -0.533 4.533 15 H 0.054 0.946 16 C 0.065 3.935 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.100 4.100 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.308 0.692 31 H 0.355 0.645 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.957 4.891 -1.090 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 C -0.192 4.192 4 C -0.121 4.121 5 C -0.173 4.173 6 C -0.014 4.014 7 N -0.208 5.208 8 H 0.240 0.760 9 C -0.105 4.105 10 C -0.106 4.106 11 C 0.159 3.841 12 H 0.067 0.933 13 N -0.381 5.381 14 C -0.573 4.573 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.106 4.106 23 H 0.081 0.919 24 H 0.128 0.872 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.180 0.820 30 H 0.117 0.883 31 H 0.171 0.829 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.175 5.007 -1.813 10.608 hybrid contribution -0.340 -0.295 1.986 2.036 sum 8.835 4.712 0.172 10.015 Atomic orbital electron populations 1.21114 0.90994 1.04687 1.02207 1.19205 0.96088 0.91014 0.94984 1.20405 0.93890 0.97059 1.07893 1.20593 0.94041 0.96385 1.01096 1.19798 0.98230 0.89844 1.09446 1.18256 0.94013 0.85080 1.04003 1.41652 1.08050 1.03967 1.67172 0.75971 1.21415 0.85058 0.95689 1.08328 1.20966 0.96454 0.89625 1.03571 1.17458 0.85493 0.87396 0.93739 0.93258 1.59488 1.19154 1.04579 1.54896 1.21834 0.98558 1.41973 0.94933 0.92743 1.25010 0.96661 0.94962 0.97024 1.69738 1.09843 1.42815 1.30961 0.86602 0.78802 0.77769 0.84916 1.20512 1.21271 1.20004 1.19079 0.91347 0.93555 1.06592 0.91887 0.87238 0.92881 0.86903 0.86774 0.87347 0.81999 0.88340 0.82860 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.26 36.00 0.33 -2.31 16 2 C -0.01 -0.25 5.87 -104.69 -0.61 -0.86 16 3 C -0.17 -2.95 9.62 -39.95 -0.38 -3.33 16 4 C -0.10 -1.58 10.01 -39.54 -0.40 -1.97 16 5 C -0.15 -2.44 10.08 -39.43 -0.40 -2.84 16 6 C 0.09 1.76 7.28 -83.99 -0.61 1.15 16 7 N -0.60 -10.06 6.07 -10.65 -0.06 -10.12 16 8 H 0.41 5.09 8.96 -40.82 -0.37 4.73 16 9 C 0.02 0.34 11.06 -16.73 -0.19 0.15 16 10 C -0.10 -2.22 5.40 -102.71 -0.55 -2.78 16 11 C 0.27 6.64 2.32 -70.02 -0.16 6.48 16 12 H 0.05 1.34 6.96 -51.93 -0.36 0.98 16 13 N -0.85 -19.92 8.88 -6.65 -0.06 -19.97 16 14 C -0.53 -14.05 7.11 -34.44 -0.25 -14.29 16 15 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.07 1.73 5.38 -17.82 -0.10 1.63 16 17 N -0.89 -24.13 11.54 55.43 0.64 -23.49 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C -0.10 -2.13 6.14 -105.14 -0.65 -2.78 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.11 2.53 4.68 -51.93 -0.24 2.28 16 25 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 26 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.16 2.76 7.31 -52.49 -0.38 2.38 16 30 H 0.31 6.76 8.00 -39.29 -0.31 6.44 16 31 H 0.36 8.90 7.08 -39.29 -0.28 8.63 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -28.41 266.32 -8.05 -36.46 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -3.60 Total: 19.05 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -3.96 Total: -21.75 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.52 Total: -53.59 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.41 -8.05 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.897 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds