Wall clock time and date at job start Mon Mar 30 2020 03:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36660 * 120.11755 * 2 1 4 4 C 1.38795 * 120.52769 * 179.97438 * 3 2 1 5 5 C 1.37785 * 120.66790 * 0.02562 * 4 3 2 6 6 C 1.39082 * 119.77765 * 359.97438 * 5 4 3 7 7 N 1.37698 * 133.52125 * 179.97438 * 6 5 4 8 8 H 0.97006 * 125.05408 * 0.05961 * 7 6 5 9 9 C 1.36825 * 109.87766 * 180.02562 * 7 6 5 10 10 C 1.34234 * 109.94338 * 359.97438 * 9 7 6 11 11 C 1.50691 * 126.50541 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47453 * 219.97761 * 11 10 9 13 13 N 1.46904 * 109.46925 * 339.97889 * 11 10 9 14 14 C 1.50703 * 109.47080 * 99.97666 * 11 10 9 15 15 H 1.08005 * 120.00071 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99950 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00262 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 120.00027 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46860 * 90.00012 * 18 16 14 20 20 H 1.48495 * 109.47039 * 209.99942 * 18 16 14 21 21 H 1.48498 * 109.46692 * 329.99928 * 18 16 14 22 22 C 1.39591 * 120.12155 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47708 * 90.00017 * 1 2 3 24 24 H 1.09005 * 109.47322 * 210.00483 * 1 2 3 25 25 H 1.09004 * 109.46997 * 329.99732 * 1 2 3 26 26 H 1.08005 * 119.73722 * 0.25193 * 3 2 1 27 27 H 1.08001 * 119.66330 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.11423 * 179.97438 * 5 4 3 29 29 H 1.08001 * 125.03091 * 180.02562 * 9 7 6 30 30 H 1.00900 * 111.00091 * 60.00132 * 13 11 10 31 31 H 1.00903 * 111.00083 * 183.95081 * 13 11 10 32 32 H 0.96999 * 120.00203 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1920 0.0005 5 6 4.2918 0.0120 0.0005 6 6 3.6145 -1.2028 0.0006 7 7 4.0248 -2.5172 0.0001 8 1 4.9488 -2.8125 0.0005 9 6 2.9351 -3.3447 -0.0002 10 6 1.8073 -2.6167 0.0006 11 6 0.3972 -3.1481 0.0000 12 1 -0.2205 -2.5387 -0.6596 13 7 0.3980 -4.5380 -0.4757 14 6 -0.1597 -3.0964 1.3994 15 1 0.4468 -2.7163 2.2083 16 6 -1.4433 -3.5344 1.6471 17 7 -2.1816 -3.9977 0.6624 18 14 -2.1334 -3.4710 3.3819 19 1 -2.8030 -2.1637 3.6008 20 1 -3.1178 -4.5679 3.5634 21 1 -1.0279 -3.6309 4.3604 22 6 2.2075 -1.2074 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6503 2.1161 0.0041 27 1 4.1083 2.1343 0.0001 28 1 5.3717 0.0301 0.0005 29 1 2.9762 -4.4239 -0.0002 30 1 0.9642 -5.1236 0.1197 31 1 -0.5426 -4.8964 -0.5466 32 1 -3.0848 -4.3054 0.8366 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261201928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:32 Heat of formation + Delta-G solvation = 27.059168 kcal Electronic energy + Delta-G solvation = -15791.109567 eV Core-core repulsion = 13329.452170 eV Total energy + Delta-G solvation = -2461.657397 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99883 -37.93497 -36.71894 -33.87195 -32.89529 -30.54001 -29.60007 -28.13669 -27.02326 -24.14614 -22.74580 -22.54590 -19.71790 -18.45838 -18.26545 -17.14309 -16.54374 -16.08032 -15.53687 -15.32531 -15.16032 -14.62189 -14.19835 -14.10298 -13.92088 -13.28202 -13.04111 -12.90052 -12.72844 -12.69644 -12.13549 -12.09115 -11.91655 -11.58545 -11.39821 -10.67244 -10.10348 -9.14593 -8.95657 -8.32609 -7.94788 -6.27061 0.38042 0.86435 1.37105 1.39689 1.48473 2.05506 2.42248 2.47006 3.10304 3.12418 3.99448 4.17609 4.25553 4.46184 4.51370 4.57518 4.73173 4.86263 4.89469 5.04508 5.10531 5.17727 5.27742 5.52406 5.67250 5.71557 5.77086 5.90503 6.03687 6.18654 6.21222 6.45699 6.74641 6.96830 7.04792 7.20257 7.47892 8.89249 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.009117 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.250405 B = 3070.360370 C = 3533.701467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 C -0.167 4.167 4 C -0.098 4.098 5 C -0.145 4.145 6 C 0.082 3.918 7 N -0.587 5.587 8 H 0.427 0.573 9 C 0.035 3.965 10 C -0.151 4.151 11 C 0.281 3.719 12 H 0.010 0.990 13 N -0.843 5.843 14 C -0.535 4.535 15 H 0.036 0.964 16 C 0.025 3.975 17 N -0.915 5.915 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.276 1.276 22 C -0.138 4.138 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.180 0.820 30 H 0.317 0.683 31 H 0.345 0.655 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 6.095 -0.553 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.050 4.050 3 C -0.187 4.187 4 C -0.117 4.117 5 C -0.165 4.165 6 C -0.026 4.026 7 N -0.192 5.192 8 H 0.266 0.734 9 C -0.090 4.090 10 C -0.158 4.158 11 C 0.170 3.830 12 H 0.028 0.972 13 N -0.371 5.371 14 C -0.575 4.575 15 H 0.054 0.946 16 C -0.175 4.175 17 N -0.555 5.555 18 Si 0.774 3.226 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.201 1.201 22 C -0.143 4.143 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.197 0.803 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.481 6.214 -1.276 13.117 hybrid contribution -0.969 -0.597 1.784 2.116 sum 10.512 5.617 0.507 11.929 Atomic orbital electron populations 1.20950 0.92020 1.03587 1.01653 1.19376 0.95863 0.92104 0.97702 1.20751 0.95109 0.96771 1.06030 1.21100 0.93389 0.98078 0.99116 1.20286 1.00199 0.88719 1.07332 1.18575 0.93166 0.86476 1.04397 1.41533 1.08594 1.03149 1.65965 0.73387 1.21574 0.85036 0.96458 1.05902 1.20837 0.95964 0.91305 1.07717 1.17113 0.86923 0.87136 0.91822 0.97201 1.59451 1.18429 1.04339 1.54930 1.21892 0.98694 1.41624 0.95333 0.94593 1.25622 0.96898 0.94830 1.00131 1.69829 1.10000 1.43362 1.32334 0.85725 0.78047 0.77762 0.81080 1.20400 1.20571 1.20124 1.19380 0.93250 0.93457 1.08219 0.92321 0.91155 0.90909 0.84584 0.82553 0.83560 0.80260 0.87393 0.84109 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.26 71.23 0.66 -4.51 16 2 C -0.05 -2.00 5.87 -19.91 -0.12 -2.12 16 3 C -0.17 -5.33 9.62 22.03 0.21 -5.12 16 4 C -0.10 -2.62 10.01 22.30 0.22 -2.40 16 5 C -0.14 -4.07 10.08 22.37 0.23 -3.84 16 6 C 0.08 2.89 7.28 39.03 0.28 3.17 16 7 N -0.59 -18.28 6.07 -187.61 -1.14 -19.42 16 8 H 0.43 9.37 8.96 -92.70 -0.83 8.53 16 9 C 0.03 1.31 11.06 83.00 0.92 2.23 16 10 C -0.15 -6.91 5.40 -18.63 -0.10 -7.02 16 11 C 0.28 14.48 2.32 43.42 0.10 14.58 16 12 H 0.01 0.59 6.96 -2.39 -0.02 0.57 16 13 N -0.84 -40.63 8.88 -174.96 -1.55 -42.19 16 14 C -0.54 -29.32 7.11 25.60 0.18 -29.14 16 15 H 0.04 2.06 7.74 -2.91 -0.02 2.03 16 16 C 0.03 1.35 5.38 84.65 0.46 1.81 16 17 N -0.92 -50.81 11.54 21.45 0.25 -50.56 16 18 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 C -0.14 -5.90 6.14 -20.20 -0.12 -6.03 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.07 3.46 4.68 -2.38 -0.01 3.45 16 25 H 0.07 2.55 8.08 -2.38 -0.02 2.54 16 26 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.18 5.91 7.31 -2.91 -0.02 5.89 16 30 H 0.32 14.10 8.00 -89.69 -0.72 13.39 16 31 H 0.34 17.87 7.08 -89.69 -0.63 17.23 16 32 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -63.50 266.32 1.49 -62.01 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -1.01 Total: 42.97 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 2.92 Total: -38.37 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -2.45 Total: -112.17 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -63.50 1.49 -62.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261201928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.071 kcal (2) G-P(sol) polarization free energy of solvation -63.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds