Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33404 * 126.26984 * 2 1 4 4 C 1.30901 * 109.87299 * 179.97438 * 3 2 1 5 5 C 1.50694 * 125.31611 * 180.02562 * 4 3 2 6 6 N 1.35036 * 109.37026 * 0.02562 * 4 3 2 7 7 C 1.37058 * 133.11980 * 180.02562 * 6 4 3 8 8 C 1.34675 * 120.56071 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.69370 * 179.72457 * 8 7 6 10 10 C 1.50702 * 109.47056 * 89.99775 * 9 8 7 11 11 H 1.07994 * 120.00332 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99467 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00433 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99598 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47088 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46763 * 120.00004 * 14 12 10 17 17 H 1.48498 * 109.47399 * 239.99815 * 14 12 10 18 18 C 1.40812 * 120.61698 * 359.97438 * 8 7 6 19 19 C 1.35879 * 119.77235 * 359.96396 * 18 8 7 20 20 C 1.37985 * 126.27078 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47014 * 89.97292 * 1 2 3 22 22 H 1.08993 * 109.47111 * 209.97850 * 1 2 3 23 23 H 1.08997 * 109.47006 * 329.97751 * 1 2 3 24 24 H 1.09001 * 109.46911 * 269.99693 * 5 4 3 25 25 H 1.09003 * 109.47518 * 29.99819 * 5 4 3 26 26 H 1.08997 * 109.47086 * 150.00011 * 5 4 3 27 27 H 1.08003 * 119.72367 * 359.97438 * 7 6 4 28 28 H 1.09002 * 109.47332 * 210.00211 * 9 8 7 29 29 H 1.09005 * 109.47063 * 329.99855 * 9 8 7 30 30 H 0.97005 * 120.00006 * 179.97438 * 13 12 10 31 31 H 1.07999 * 120.11688 * 179.97438 * 18 8 7 32 32 H 1.08002 * 120.41443 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0756 0.0000 4 6 3.5520 0.7060 0.0006 5 6 4.7349 1.6397 0.0013 6 7 3.6221 -0.6425 0.0004 7 6 4.6697 -1.5262 0.0012 8 6 4.4455 -2.8541 0.0012 9 6 5.6120 -3.8082 -0.0042 10 6 6.0067 -4.1271 1.4149 11 1 5.4671 -3.6830 2.2382 12 6 7.0573 -4.9850 1.6618 13 7 7.7154 -5.5247 0.6592 14 14 7.5471 -5.3798 3.4208 15 1 6.6564 -4.6498 4.3583 16 1 7.4195 -6.8409 3.6541 17 1 8.9542 -4.9632 3.6483 18 6 3.1312 -3.3595 0.0010 19 6 2.0781 -2.5007 0.0015 20 6 2.3234 -1.1125 0.0005 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 5.0205 1.8650 -1.0262 25 1 4.4684 2.5634 0.5151 26 1 5.5712 1.1662 0.5154 27 1 5.6838 -1.1545 0.0018 28 1 5.3277 -4.7268 -0.5175 29 1 6.4546 -3.3490 -0.5212 30 1 8.4548 -6.1280 0.8330 31 1 2.9606 -4.4259 0.0006 32 1 1.0658 -2.8770 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261202422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = 61.927307 kcal Electronic energy + Delta-G solvation = -15259.406926 eV Core-core repulsion = 12799.261524 eV Total energy + Delta-G solvation = -2460.145401 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.35860 -37.37312 -33.76418 -33.43681 -31.46443 -30.45771 -29.05653 -27.24312 -24.90073 -23.79241 -21.89992 -20.64300 -19.97215 -16.76351 -16.48831 -16.18783 -15.66179 -14.89341 -14.27725 -14.22953 -13.33839 -13.08360 -12.89655 -12.72410 -12.41205 -12.35934 -11.98113 -11.73347 -11.63299 -11.12072 -10.95973 -10.72732 -10.63470 -10.06004 -9.92352 -9.79429 -9.59640 -8.57221 -8.36266 -6.84931 -6.18737 -4.24278 1.34869 1.81919 3.10331 3.20791 3.29146 3.33065 3.35309 3.95822 4.34062 4.62279 4.96083 5.10745 5.16841 5.23301 5.43129 5.55304 5.58269 5.65405 5.70450 5.84439 5.87239 5.98063 6.09724 6.37249 6.45190 6.64563 6.77774 6.97013 7.13999 7.32862 7.51773 7.70395 7.76121 8.11804 8.29877 8.80789 9.41148 10.90608 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.006421 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.538891 B = 4359.976667 C = 4667.867228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.017 4.017 3 N -0.458 5.458 4 C 0.143 3.857 5 C -0.059 4.059 6 N -0.348 5.348 7 C 0.012 3.988 8 C -0.045 4.045 9 C 0.057 3.943 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.098 4.098 19 C -0.097 4.097 20 C 0.004 3.996 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.135 0.865 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 7.704 -1.916 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.153 4.153 3 N -0.174 5.174 4 C -0.111 4.111 5 C -0.117 4.117 6 N -0.018 5.018 7 C -0.106 4.106 8 C -0.048 4.048 9 C 0.019 3.981 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.107 4.107 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.177 0.823 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.354 8.518 -1.957 12.090 hybrid contribution 0.749 -1.217 0.979 1.732 sum -7.605 7.301 -0.978 10.588 Atomic orbital electron populations 1.19882 0.87462 1.02222 1.01678 1.20726 0.95829 0.86694 1.12063 1.69716 0.99512 1.30394 1.17748 1.22879 0.95015 0.80106 1.13148 1.20054 0.91791 0.96891 1.02969 1.42679 1.06921 1.07059 1.45108 1.21455 0.91219 0.89186 1.08763 1.20348 0.97320 0.93050 0.94070 1.18310 0.89086 0.92467 0.98208 1.21056 1.15638 1.27744 0.91199 0.92366 1.24996 0.96050 0.95626 0.97410 1.69952 1.21439 1.30904 1.30666 0.86463 0.78470 0.78270 0.84450 1.19659 1.20771 1.20802 1.21212 0.91652 1.00468 0.98561 1.20413 0.99952 0.89065 1.02209 1.19389 0.84151 0.94948 1.12192 0.91868 0.91611 0.91480 0.90792 0.89632 0.90908 0.82272 0.94481 0.94950 0.92669 0.84707 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 10.44 36.01 0.38 -0.32 16 2 C -0.02 -0.29 7.21 -82.00 -0.59 -0.88 16 3 N -0.46 -8.44 11.19 -6.40 -0.07 -8.51 16 4 C 0.14 2.52 7.96 -155.09 -1.23 1.28 16 5 C -0.06 -0.77 10.33 36.00 0.37 -0.40 16 6 N -0.35 -6.56 2.94 -58.16 -0.17 -6.73 16 7 C 0.01 0.24 10.40 -16.48 -0.17 0.07 16 8 C -0.05 -0.93 5.04 -104.91 -0.53 -1.45 16 9 C 0.06 1.36 5.08 -29.03 -0.15 1.21 16 10 C -0.52 -13.73 9.09 -34.44 -0.31 -14.04 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 14 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.10 -1.78 9.73 -39.46 -0.38 -2.16 16 19 C -0.10 -1.60 10.10 -39.39 -0.40 -2.00 16 20 C 0.00 0.07 6.74 -84.09 -0.57 -0.50 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 27 H 0.16 2.82 7.98 -52.48 -0.42 2.40 16 28 H 0.04 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -30.36 280.91 -8.15 -38.52 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.18 Total: -1.21 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -3.68 Total: -17.64 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.49 Total: -39.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.36 -8.15 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.444 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds