Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33404 * 126.26984 * 2 1 4 4 C 1.30901 * 109.87299 * 179.97438 * 3 2 1 5 5 C 1.50694 * 125.31611 * 180.02562 * 4 3 2 6 6 N 1.35036 * 109.37026 * 0.02562 * 4 3 2 7 7 C 1.37058 * 133.11980 * 180.02562 * 6 4 3 8 8 C 1.34675 * 120.56071 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.69370 * 179.72457 * 8 7 6 10 10 C 1.50702 * 109.47056 * 89.99775 * 9 8 7 11 11 H 1.07994 * 120.00332 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99467 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00433 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99598 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47088 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46763 * 120.00004 * 14 12 10 17 17 H 1.48498 * 109.47399 * 239.99815 * 14 12 10 18 18 C 1.40812 * 120.61698 * 359.97438 * 8 7 6 19 19 C 1.35879 * 119.77235 * 359.96396 * 18 8 7 20 20 C 1.37985 * 126.27078 * 179.97438 * 2 1 3 21 21 H 1.08995 * 109.47014 * 89.97292 * 1 2 3 22 22 H 1.08993 * 109.47111 * 209.97850 * 1 2 3 23 23 H 1.08997 * 109.47006 * 329.97751 * 1 2 3 24 24 H 1.09001 * 109.46911 * 269.99693 * 5 4 3 25 25 H 1.09003 * 109.47518 * 29.99819 * 5 4 3 26 26 H 1.08997 * 109.47086 * 150.00011 * 5 4 3 27 27 H 1.08003 * 119.72367 * 359.97438 * 7 6 4 28 28 H 1.09002 * 109.47332 * 210.00211 * 9 8 7 29 29 H 1.09005 * 109.47063 * 329.99855 * 9 8 7 30 30 H 0.97005 * 120.00006 * 179.97438 * 13 12 10 31 31 H 1.07999 * 120.11688 * 179.97438 * 18 8 7 32 32 H 1.08002 * 120.41443 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0756 0.0000 4 6 3.5520 0.7060 0.0006 5 6 4.7349 1.6397 0.0013 6 7 3.6221 -0.6425 0.0004 7 6 4.6697 -1.5262 0.0012 8 6 4.4455 -2.8541 0.0012 9 6 5.6120 -3.8082 -0.0042 10 6 6.0067 -4.1271 1.4149 11 1 5.4671 -3.6830 2.2382 12 6 7.0573 -4.9850 1.6618 13 7 7.7154 -5.5247 0.6592 14 14 7.5471 -5.3798 3.4208 15 1 6.6564 -4.6498 4.3583 16 1 7.4195 -6.8409 3.6541 17 1 8.9542 -4.9632 3.6483 18 6 3.1312 -3.3595 0.0010 19 6 2.0781 -2.5007 0.0015 20 6 2.3234 -1.1125 0.0005 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 5.0205 1.8650 -1.0262 25 1 4.4684 2.5634 0.5151 26 1 5.5712 1.1662 0.5154 27 1 5.6838 -1.1545 0.0018 28 1 5.3277 -4.7268 -0.5175 29 1 6.4546 -3.3490 -0.5212 30 1 8.4548 -6.1280 0.8330 31 1 2.9606 -4.4259 0.0006 32 1 1.0658 -2.8770 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261202422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = 46.424026 kcal Electronic energy + Delta-G solvation = -15260.079198 eV Core-core repulsion = 12799.261524 eV Total energy + Delta-G solvation = -2460.817674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.71639 -38.82657 -35.38135 -35.01921 -33.10031 -31.77839 -30.14573 -29.00294 -26.22375 -25.56266 -23.38617 -22.03563 -21.36769 -18.56006 -18.13200 -17.58718 -17.03125 -16.69752 -15.75409 -15.53172 -14.71699 -14.54354 -14.08159 -13.98096 -13.84079 -13.54910 -13.43287 -13.35082 -12.92753 -12.75232 -12.61296 -12.33122 -12.26204 -11.72725 -11.50630 -11.36955 -11.21744 -10.63805 -9.89572 -8.30131 -8.14518 -6.37077 -0.03409 0.39442 1.38309 1.40559 1.52185 1.73988 2.00995 2.36000 2.57874 3.08082 3.44405 3.61326 3.80904 3.92944 4.12067 4.20097 4.40168 4.54890 4.66368 4.71762 4.90106 4.91245 4.95729 5.08335 5.10807 5.14990 5.29814 5.34399 5.60677 5.69756 5.78813 5.82480 6.09763 6.31495 6.74550 6.94977 7.32226 8.85133 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.006421 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.538891 B = 4359.976667 C = 4667.867228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.013 4.013 3 N -0.481 5.481 4 C 0.139 3.861 5 C -0.060 4.060 6 N -0.361 5.361 7 C 0.010 3.990 8 C -0.061 4.061 9 C 0.067 3.933 10 C -0.530 4.530 11 H 0.052 0.948 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.961 3.039 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.124 4.124 19 C -0.073 4.073 20 C -0.030 4.030 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.019 0.981 29 H 0.013 0.987 30 H 0.267 0.733 31 H 0.143 0.857 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 8.504 -1.165 12.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.149 4.149 3 N -0.197 5.197 4 C -0.115 4.115 5 C -0.118 4.118 6 N -0.031 5.031 7 C -0.108 4.108 8 C -0.064 4.064 9 C 0.029 3.971 10 C -0.568 4.568 11 H 0.070 0.930 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.786 3.214 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.145 4.145 19 C -0.092 4.092 20 C -0.140 4.140 21 H 0.098 0.902 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.182 0.818 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.699 9.317 -1.209 13.504 hybrid contribution 1.084 -1.331 0.700 1.853 sum -8.615 7.987 -0.509 11.759 Atomic orbital electron populations 1.20067 0.84406 1.03646 1.03159 1.21535 0.97760 0.86006 1.09618 1.69810 1.00021 1.30940 1.18958 1.23770 0.96132 0.80248 1.11390 1.20248 0.90486 0.96651 1.04389 1.42805 1.07032 1.07456 1.45796 1.21382 0.91800 0.89061 1.08596 1.20060 0.97228 0.93000 0.96105 1.18023 0.89929 0.92446 0.96663 1.21324 1.15642 1.27603 0.92212 0.92982 1.25804 0.96051 0.95495 1.01342 1.70055 1.22057 1.31646 1.32722 0.85457 0.78169 0.78177 0.79619 1.19355 1.20115 1.20197 1.21248 0.91138 1.01288 1.00786 1.20783 1.01227 0.88095 0.99066 1.19896 0.84263 0.96037 1.13764 0.90225 0.89512 0.90777 0.89125 0.88095 0.90261 0.81750 0.96317 0.96842 0.92414 0.83899 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.44 71.24 0.74 -0.49 16 2 C -0.01 -0.42 7.21 42.26 0.30 -0.11 16 3 N -0.48 -16.89 11.19 -174.16 -1.95 -18.84 16 4 C 0.14 4.72 7.96 138.01 1.10 5.82 16 5 C -0.06 -1.46 10.33 71.23 0.74 -0.73 16 6 N -0.36 -13.30 2.94 -337.92 -0.99 -14.29 16 7 C 0.01 0.39 10.40 83.06 0.86 1.26 16 8 C -0.06 -2.55 5.04 -20.05 -0.10 -2.65 16 9 C 0.07 3.32 5.08 29.10 0.15 3.47 16 10 C -0.53 -28.58 9.09 25.60 0.23 -28.35 16 11 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 12 C 0.01 0.66 5.46 84.65 0.46 1.12 16 13 N -0.93 -53.01 13.29 21.45 0.28 -52.73 16 14 Si 0.96 42.62 29.54 68.60 2.03 44.64 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.12 -4.46 9.73 22.35 0.22 -4.24 16 19 C -0.07 -2.26 10.10 22.39 0.23 -2.03 16 20 C -0.03 -1.06 6.74 38.76 0.26 -0.80 16 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.08 1.83 8.04 -2.39 -0.02 1.82 16 27 H 0.17 5.95 7.98 -2.91 -0.02 5.93 16 28 H 0.02 0.97 8.09 -2.39 -0.02 0.95 16 29 H 0.01 0.69 8.07 -2.38 -0.02 0.68 16 30 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 31 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -64.98 280.91 5.66 -59.31 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.10 Total: 9.64 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 5.19 Total: -27.74 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.66 Total: -85.86 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -64.98 5.66 -59.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261202422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.737 kcal (2) G-P(sol) polarization free energy of solvation -64.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds