Wall clock time and date at job start Mon Mar 30 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38546 * 125.49607 * 2 1 4 4 C 1.38930 * 107.56633 * 180.02562 * 3 2 1 5 5 C 1.40800 * 132.96581 * 180.02562 * 4 3 2 6 6 C 1.36062 * 119.22490 * 179.97438 * 5 4 3 7 7 C 1.40471 * 119.59512 * 359.97438 * 6 5 4 8 8 C 1.34937 * 120.42986 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.67277 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47466 * 85.02196 * 9 8 7 11 11 C 1.50696 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00254 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99694 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00060 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47138 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47091 * 120.00730 * 15 13 11 18 18 H 1.48503 * 109.47144 * 240.00152 * 15 13 11 19 19 N 1.36539 * 120.65473 * 359.97438 * 8 7 6 20 20 N 1.31485 * 125.49575 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47408 * 269.98300 * 1 2 3 22 22 H 1.08998 * 109.47249 * 29.98351 * 1 2 3 23 23 H 1.09004 * 109.47207 * 149.98398 * 1 2 3 24 24 H 1.07997 * 126.21896 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.38824 * 359.97438 * 5 4 3 26 26 H 1.07999 * 120.20678 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.79103 * 179.97438 * 7 6 5 28 28 H 1.09008 * 109.46858 * 205.02104 * 9 8 7 29 29 H 1.08997 * 109.47057 * 325.01498 * 9 8 7 30 30 H 1.09005 * 109.46355 * 300.00152 * 10 9 8 31 31 H 1.08997 * 109.46839 * 59.99386 * 10 9 8 32 32 H 0.97002 * 119.99270 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.1280 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3851 -0.0004 6 6 6.0215 0.6708 -0.0006 7 6 5.9706 -0.7330 -0.0005 8 6 4.7831 -1.3739 -0.0007 9 6 4.7484 -2.8804 -0.0011 10 6 4.8618 -3.3937 1.4358 11 6 4.8278 -4.9002 1.4353 12 1 4.7342 -5.4380 0.5033 13 6 4.9162 -5.5922 2.6245 14 7 5.0297 -4.9374 3.7594 15 14 4.8733 -7.4597 2.6239 16 1 4.7403 -7.9513 1.2290 17 1 6.1305 -7.9839 3.2154 18 1 3.7154 -7.9285 3.4269 19 7 3.6126 -0.6708 -0.0004 20 7 2.2704 -1.0705 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3634 -0.8899 -0.5141 24 1 1.9726 2.1534 0.0004 25 1 4.8877 2.4649 -0.0001 26 1 6.9740 1.1798 -0.0001 27 1 6.8878 -1.3032 -0.0011 28 1 3.8090 -3.2221 -0.4359 29 1 5.5818 -3.2628 -0.5904 30 1 5.8012 -3.0519 1.8704 31 1 4.0285 -3.0112 2.0250 32 1 5.0915 -5.4243 4.5961 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:25 Heat of formation + Delta-G solvation = 82.021324 kcal Electronic energy + Delta-G solvation = -15194.724597 eV Core-core repulsion = 12735.450537 eV Total energy + Delta-G solvation = -2459.274060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.66519 -37.34924 -34.35083 -32.77738 -31.91120 -29.95693 -28.53103 -27.26771 -25.37083 -22.58566 -22.08837 -20.72771 -19.60545 -17.02554 -16.49734 -15.80503 -15.37837 -15.31165 -14.48414 -13.97996 -13.53879 -13.20883 -12.82739 -12.68402 -12.54437 -12.33392 -11.69667 -11.60647 -11.32460 -11.01412 -10.97588 -10.63906 -10.23911 -10.09358 -9.95021 -9.41537 -9.16467 -8.85135 -8.39574 -7.17952 -6.03688 -4.07207 1.13320 1.47753 2.61595 3.00043 3.29876 3.37216 3.41480 3.71957 4.41777 4.56454 4.79143 5.06216 5.24851 5.25370 5.32423 5.45673 5.59179 5.69959 5.82160 5.89732 6.06675 6.07935 6.14885 6.38295 6.42523 6.48073 6.72168 6.83100 6.98159 7.33280 7.58538 7.71106 7.93512 7.98159 8.32581 8.98562 9.56990 11.07572 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.006693 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.681326 B = 4182.532358 C = 4854.173241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.093 3.907 3 C -0.303 4.303 4 C 0.109 3.891 5 C -0.148 4.148 6 C -0.066 4.066 7 C -0.189 4.189 8 C 0.178 3.822 9 C -0.081 4.081 10 C 0.034 3.966 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.266 5.266 20 N -0.307 5.307 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.147 0.853 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.153 0.847 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.020 0.980 31 H 0.019 0.981 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 12.620 -7.900 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.333 4.333 4 C -0.010 4.010 5 C -0.168 4.168 6 C -0.089 4.089 7 C -0.210 4.210 8 C 0.071 3.929 9 C -0.119 4.119 10 C -0.004 4.004 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.032 5.032 20 N -0.131 5.131 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.165 0.835 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.170 0.830 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.996 11.263 -7.716 13.797 hybrid contribution 0.082 -0.031 0.259 0.274 sum -1.914 11.231 -7.457 13.617 Atomic orbital electron populations 1.20189 0.86501 1.03148 1.03122 1.22223 0.97016 0.90719 0.96583 1.21037 0.89301 0.99383 1.23537 1.19658 0.95972 0.84042 1.01353 1.20415 0.89396 1.00160 1.06790 1.21132 0.98400 0.93786 0.95545 1.20617 0.96647 0.94593 1.09164 1.20890 0.81722 0.96517 0.93777 1.21073 1.03233 0.84298 1.03329 1.19072 0.97631 0.95991 0.87664 1.21187 1.50570 0.91144 0.93019 0.92345 1.25020 0.95135 0.98660 0.95548 1.69989 1.50106 1.35452 0.97696 0.86490 0.77618 0.85480 0.78161 1.19641 1.20944 1.20947 1.46187 1.05626 1.05174 1.46224 1.77938 0.83100 1.21244 1.30858 0.90315 0.90493 0.90769 0.83479 0.84229 0.84625 0.82975 0.90529 0.90070 0.96123 0.96311 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.43 36.00 0.38 -0.49 16 2 C 0.09 1.58 7.15 -82.63 -0.59 0.99 16 3 C -0.30 -4.84 10.83 -39.21 -0.42 -5.27 16 4 C 0.11 1.89 6.81 -84.27 -0.57 1.31 16 5 C -0.15 -2.08 10.11 -39.40 -0.40 -2.47 16 6 C -0.07 -0.88 10.07 -39.52 -0.40 -1.28 16 7 C -0.19 -3.03 9.60 -39.91 -0.38 -3.41 16 8 C 0.18 3.47 6.07 -81.67 -0.50 2.98 16 9 C -0.08 -1.75 5.31 -27.89 -0.15 -1.90 16 10 C 0.03 0.89 4.95 -27.89 -0.14 0.75 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 N -0.27 -5.36 3.90 -7.01 -0.03 -5.38 16 20 N -0.31 -6.39 12.33 33.51 0.41 -5.97 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 25 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 26 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.08 1.73 7.94 -51.92 -0.41 1.31 16 29 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 281.31 15.07 4.24 4.24 Total: -1.00 -33.33 281.31 -7.43 -40.76 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.18 Total: -1.57 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.59 Total: -22.38 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 1.12 Total: -37.82 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.33 -7.43 -40.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.777 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds