Wall clock time and date at job start Mon Mar 30 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38546 * 125.49607 * 2 1 4 4 C 1.38930 * 107.56633 * 180.02562 * 3 2 1 5 5 C 1.40800 * 132.96581 * 180.02562 * 4 3 2 6 6 C 1.36062 * 119.22490 * 179.97438 * 5 4 3 7 7 C 1.40471 * 119.59512 * 359.97438 * 6 5 4 8 8 C 1.34937 * 120.42986 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.67277 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47466 * 85.02196 * 9 8 7 11 11 C 1.50696 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00254 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99694 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00060 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47138 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47091 * 120.00730 * 15 13 11 18 18 H 1.48503 * 109.47144 * 240.00152 * 15 13 11 19 19 N 1.36539 * 120.65473 * 359.97438 * 8 7 6 20 20 N 1.31485 * 125.49575 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47408 * 269.98300 * 1 2 3 22 22 H 1.08998 * 109.47249 * 29.98351 * 1 2 3 23 23 H 1.09004 * 109.47207 * 149.98398 * 1 2 3 24 24 H 1.07997 * 126.21896 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.38824 * 359.97438 * 5 4 3 26 26 H 1.07999 * 120.20678 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.79103 * 179.97438 * 7 6 5 28 28 H 1.09008 * 109.46858 * 205.02104 * 9 8 7 29 29 H 1.08997 * 109.47057 * 325.01498 * 9 8 7 30 30 H 1.09005 * 109.46355 * 300.00152 * 10 9 8 31 31 H 1.08997 * 109.46839 * 59.99386 * 10 9 8 32 32 H 0.97002 * 119.99270 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.1280 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3851 -0.0004 6 6 6.0215 0.6708 -0.0006 7 6 5.9706 -0.7330 -0.0005 8 6 4.7831 -1.3739 -0.0007 9 6 4.7484 -2.8804 -0.0011 10 6 4.8618 -3.3937 1.4358 11 6 4.8278 -4.9002 1.4353 12 1 4.7342 -5.4380 0.5033 13 6 4.9162 -5.5922 2.6245 14 7 5.0297 -4.9374 3.7594 15 14 4.8733 -7.4597 2.6239 16 1 4.7403 -7.9513 1.2290 17 1 6.1305 -7.9839 3.2154 18 1 3.7154 -7.9285 3.4269 19 7 3.6126 -0.6708 -0.0004 20 7 2.2704 -1.0705 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3634 -0.8899 -0.5141 24 1 1.9726 2.1534 0.0004 25 1 4.8877 2.4649 -0.0001 26 1 6.9740 1.1798 -0.0001 27 1 6.8878 -1.3032 -0.0011 28 1 3.8090 -3.2221 -0.4359 29 1 5.5818 -3.2628 -0.5904 30 1 5.8012 -3.0519 1.8704 31 1 4.0285 -3.0112 2.0250 32 1 5.0915 -5.4243 4.5961 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:25 Heat of formation + Delta-G solvation = 61.704952 kcal Electronic energy + Delta-G solvation = -15195.605581 eV Core-core repulsion = 12735.450537 eV Total energy + Delta-G solvation = -2460.155044 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.93972 -38.64324 -36.10178 -34.48107 -33.31706 -31.58389 -29.84255 -28.51304 -27.21435 -24.21306 -23.43369 -22.29420 -20.95959 -18.69946 -18.24420 -17.12023 -16.76479 -16.49621 -16.42145 -15.41577 -15.00200 -14.58155 -14.40237 -14.14914 -13.79255 -13.62880 -13.34932 -12.93077 -12.89338 -12.73629 -12.37549 -12.28925 -12.00082 -11.84333 -11.49661 -11.27778 -10.99891 -10.63717 -10.16008 -8.45807 -8.25423 -6.39169 -0.09122 0.23290 1.35249 1.37121 1.38355 1.51871 1.74575 2.36434 2.51304 3.06998 3.27962 3.69695 3.83011 4.05898 4.20654 4.25781 4.42807 4.53053 4.60806 4.74297 4.76296 4.80304 4.94473 4.97273 5.07289 5.19456 5.28540 5.36778 5.48742 5.67124 5.72112 5.77585 6.07934 6.11657 6.68479 6.76119 7.30616 8.86013 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.006693 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.681326 B = 4182.532358 C = 4854.173241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.080 3.920 3 C -0.304 4.304 4 C 0.084 3.916 5 C -0.134 4.134 6 C -0.065 4.065 7 C -0.169 4.169 8 C 0.123 3.877 9 C -0.063 4.063 10 C 0.047 3.953 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.280 1.280 19 N -0.284 5.284 20 N -0.373 5.373 21 H 0.086 0.914 22 H 0.111 0.889 23 H 0.069 0.931 24 H 0.183 0.817 25 H 0.184 0.816 26 H 0.185 0.815 27 H 0.170 0.830 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.005 0.995 31 H -0.029 1.029 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 14.098 -8.699 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.332 4.332 4 C -0.035 4.035 5 C -0.153 4.153 6 C -0.088 4.088 7 C -0.191 4.191 8 C 0.017 3.983 9 C -0.101 4.101 10 C 0.009 3.991 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.795 3.205 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.206 1.206 19 N -0.050 5.050 20 N -0.199 5.199 21 H 0.105 0.895 22 H 0.129 0.871 23 H 0.088 0.912 24 H 0.201 0.799 25 H 0.201 0.799 26 H 0.203 0.797 27 H 0.187 0.813 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.023 0.977 31 H -0.010 1.010 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.145 12.750 -8.532 15.384 hybrid contribution -0.166 -0.353 0.513 0.645 sum -1.311 12.397 -8.018 14.822 Atomic orbital electron populations 1.20364 0.83626 1.04628 1.04050 1.23004 0.98898 0.90396 0.95363 1.21538 0.88655 1.00624 1.22409 1.20455 0.98046 0.83261 1.01757 1.21035 0.88038 1.02229 1.04046 1.21627 1.00460 0.92310 0.94395 1.21071 0.95810 0.96516 1.05673 1.20763 0.83166 0.95463 0.98898 1.20659 1.02741 0.86851 0.99848 1.18816 0.94620 0.95323 0.90315 1.21625 1.50595 0.92422 0.93524 0.91802 1.26030 0.94372 1.04383 0.94987 1.70126 1.50936 1.37787 0.98490 0.85315 0.77961 0.78549 0.78720 1.18410 1.19696 1.20609 1.46265 1.05354 1.06385 1.47035 1.77833 0.84301 1.23989 1.33780 0.89505 0.87075 0.91190 0.79942 0.79923 0.79743 0.81282 0.92745 0.88201 0.97688 1.01042 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.43 71.23 0.74 -0.87 16 2 C 0.08 2.74 7.15 42.68 0.31 3.05 16 3 C -0.30 -9.25 10.83 22.51 0.24 -9.01 16 4 C 0.08 2.81 6.81 39.11 0.27 3.08 16 5 C -0.13 -3.30 10.11 22.39 0.23 -3.08 16 6 C -0.07 -1.52 10.07 22.31 0.22 -1.29 16 7 C -0.17 -5.22 9.60 22.05 0.21 -5.01 16 8 C 0.12 4.95 6.07 41.07 0.25 5.20 16 9 C -0.06 -2.86 5.31 29.85 0.16 -2.70 16 10 C 0.05 2.61 4.95 29.85 0.15 2.76 16 11 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 12 H 0.06 3.60 7.74 -2.91 -0.02 3.57 16 13 C 0.00 0.01 5.46 84.65 0.46 0.47 16 14 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 15 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 N -0.28 -11.76 3.90 -176.09 -0.69 -12.44 16 20 N -0.37 -16.32 12.33 -47.89 -0.59 -16.91 16 21 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 25 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.17 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.05 2.64 7.94 -2.38 -0.02 2.62 16 29 H 0.10 3.97 8.10 -2.39 -0.02 3.95 16 30 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 31 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 32 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -77.28 281.31 5.61 -71.67 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.10 Total: 7.85 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 3.47 Total: -39.24 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -0.99 Total: -87.55 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.28 5.61 -71.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.380 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds