Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30901 * 125.31423 * 2 1 4 4 C 1.33395 * 109.87173 * 180.02562 * 3 2 1 5 5 C 1.38000 * 107.46262 * 0.02562 * 4 3 2 6 6 C 1.40965 * 133.71408 * 179.97438 * 5 4 3 7 7 C 1.35877 * 119.17588 * 179.78611 * 6 5 4 8 8 C 1.40809 * 119.77239 * 0.48506 * 7 6 5 9 9 C 1.50697 * 119.68964 * 179.75694 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72949 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.34668 * 120.61663 * 359.48764 * 8 7 6 20 20 N 1.35031 * 125.31286 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.47334 * 269.97906 * 1 2 3 22 22 H 1.08994 * 109.47232 * 29.97701 * 1 2 3 23 23 H 1.08999 * 109.46971 * 149.98119 * 1 2 3 24 24 H 1.07998 * 126.27225 * 179.97438 * 4 3 2 25 25 H 1.08003 * 120.41315 * 0.05082 * 6 5 4 26 26 H 1.08008 * 120.11302 * 180.25228 * 7 6 5 27 27 H 1.09004 * 109.46801 * 149.72987 * 9 8 7 28 28 H 1.09000 * 109.47461 * 29.73519 * 9 8 7 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.08007 * 119.72209 * 180.24931 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0681 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6662 -0.0015 6 6 4.6507 -1.6038 -0.0029 7 6 4.3562 -2.9303 0.0009 8 6 3.0115 -3.3480 -0.0043 9 6 2.6870 -4.8196 -0.0057 10 6 2.5761 -5.3161 -1.4486 11 6 2.2522 -6.7879 -1.4499 12 1 2.1366 -7.3163 -0.5151 13 6 2.0973 -7.4587 -2.6446 14 7 2.2377 -6.8152 -3.7830 15 14 1.6883 -9.2813 -2.6462 16 1 0.3991 -9.4999 -1.9423 17 1 1.5758 -9.7621 -4.0467 18 1 2.7652 -10.0310 -1.9509 19 6 2.0127 -2.4447 -0.0026 20 7 2.2875 -1.1019 -0.0005 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 4.3972 1.3821 -0.0011 25 1 5.6785 -1.2720 -0.0025 26 1 5.1509 -3.6618 0.0040 27 1 1.7401 -4.9833 0.5087 28 1 3.4782 -5.3667 0.5069 29 1 3.5231 -5.1524 -1.9630 30 1 1.7849 -4.7692 -1.9613 31 1 2.1290 -7.2872 -4.6235 32 1 0.9864 -2.7811 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261210198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = 63.469900 kcal Electronic energy + Delta-G solvation = -15055.520886 eV Core-core repulsion = 12595.442377 eV Total energy + Delta-G solvation = -2460.078510 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.55252 -37.71759 -33.98417 -33.37571 -32.15781 -30.61384 -28.85711 -26.32897 -25.25930 -22.95012 -22.09578 -21.10007 -19.97950 -17.18332 -16.57890 -16.30342 -15.79035 -14.98886 -14.58880 -14.51019 -13.58112 -13.11459 -13.08683 -12.88183 -12.57763 -12.39290 -11.93364 -11.66683 -11.42440 -10.99928 -10.94718 -10.68122 -10.43996 -10.13496 -9.96543 -9.75922 -9.25045 -8.61216 -8.44352 -7.16464 -6.08786 -4.13020 1.08833 1.54029 2.85347 3.21097 3.27559 3.32818 3.34490 3.68918 4.38306 4.54558 4.70477 4.91434 5.08329 5.22146 5.25710 5.27007 5.46723 5.51956 5.61172 5.84745 5.96200 6.01046 6.16665 6.41032 6.44913 6.60849 6.77152 6.79859 6.94202 7.43274 7.54642 7.64982 7.88899 8.08429 8.28171 8.93488 9.51887 11.02097 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042079 B = 0.005401 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.257719 B = 5183.232664 C = 5499.460756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.148 3.852 3 N -0.457 5.457 4 C -0.033 4.033 5 C -0.001 4.001 6 C -0.087 4.087 7 C -0.105 4.105 8 C -0.067 4.067 9 C -0.072 4.072 10 C 0.029 3.971 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.025 3.975 20 N -0.353 5.353 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.176 0.824 25 H 0.143 0.857 26 H 0.137 0.863 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 9.951 7.942 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 N -0.172 5.172 4 C -0.188 4.188 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.126 4.126 8 C -0.069 4.069 9 C -0.110 4.110 10 C -0.008 4.008 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.094 4.094 20 N -0.023 5.023 21 H 0.094 0.906 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.193 0.807 25 H 0.160 0.840 26 H 0.155 0.845 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.435 10.740 7.744 13.248 hybrid contribution 0.189 -1.867 -0.230 1.891 sum 0.624 8.873 7.514 11.644 Atomic orbital electron populations 1.20101 0.84813 1.03956 1.03123 1.23028 0.95541 0.79703 1.12332 1.69868 1.02578 1.27724 1.17070 1.22383 0.94464 0.90454 1.11541 1.19705 0.84269 0.95432 1.11686 1.20459 0.97525 0.91670 1.01013 1.21148 0.96453 0.95627 0.99381 1.20016 0.92085 0.97734 0.97113 1.20809 1.01249 0.86683 1.02245 1.19096 0.97582 0.95759 0.88326 1.21171 1.48619 0.94249 0.92415 0.92511 1.25025 0.95274 0.98397 0.95609 1.69958 1.49521 1.36369 0.97362 0.86632 0.79002 0.85186 0.77037 1.20180 1.21240 1.20155 1.21426 1.01206 0.79522 1.07223 1.42703 1.07900 1.06188 1.45486 0.90612 0.89360 0.90814 0.80680 0.83967 0.84502 0.91796 0.91312 0.96270 0.96482 0.92799 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.33 36.01 0.37 -0.34 16 2 C 0.15 2.34 7.96 -155.09 -1.23 1.11 16 3 N -0.46 -7.63 11.19 -10.12 -0.11 -7.75 16 4 C -0.03 -0.51 12.02 -16.96 -0.20 -0.71 16 5 C 0.00 -0.02 6.80 -84.09 -0.57 -0.59 16 6 C -0.09 -1.24 10.11 -39.40 -0.40 -1.64 16 7 C -0.11 -1.61 9.73 -39.46 -0.38 -2.00 16 8 C -0.07 -1.14 5.10 -104.92 -0.54 -1.67 16 9 C -0.07 -1.35 5.26 -27.89 -0.15 -1.50 16 10 C 0.03 0.72 4.96 -27.88 -0.14 0.58 16 11 C -0.53 -14.21 9.11 -34.44 -0.31 -14.52 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.03 0.41 10.40 -16.48 -0.17 0.24 16 20 N -0.35 -5.84 2.94 -58.16 -0.17 -6.02 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 24 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 25 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 26 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 27 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 28 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.16 2.33 7.98 -52.48 -0.42 1.91 16 LS Contribution 280.48 15.07 4.23 4.23 Total: -1.00 -31.48 280.48 -8.34 -39.82 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.18 Total: -1.21 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.82 Total: -19.50 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.45 Total: -39.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.48 -8.34 -39.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.289 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds