Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30901 * 125.31423 * 2 1 4 4 C 1.33395 * 109.87173 * 180.02562 * 3 2 1 5 5 C 1.38000 * 107.46262 * 0.02562 * 4 3 2 6 6 C 1.40965 * 133.71408 * 179.97438 * 5 4 3 7 7 C 1.35877 * 119.17588 * 179.78611 * 6 5 4 8 8 C 1.40809 * 119.77239 * 0.48506 * 7 6 5 9 9 C 1.50697 * 119.68964 * 179.75694 * 8 7 6 10 10 C 1.52996 * 109.47491 * 269.72949 * 9 8 7 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.34668 * 120.61663 * 359.48764 * 8 7 6 20 20 N 1.35031 * 125.31286 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.47334 * 269.97906 * 1 2 3 22 22 H 1.08994 * 109.47232 * 29.97701 * 1 2 3 23 23 H 1.08999 * 109.46971 * 149.98119 * 1 2 3 24 24 H 1.07998 * 126.27225 * 179.97438 * 4 3 2 25 25 H 1.08003 * 120.41315 * 0.05082 * 6 5 4 26 26 H 1.08008 * 120.11302 * 180.25228 * 7 6 5 27 27 H 1.09004 * 109.46801 * 149.72987 * 9 8 7 28 28 H 1.09000 * 109.47461 * 29.73519 * 9 8 7 29 29 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 30 30 H 1.08994 * 109.47405 * 300.00031 * 10 9 8 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.08007 * 119.72209 * 180.24931 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0681 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6662 -0.0015 6 6 4.6507 -1.6038 -0.0029 7 6 4.3562 -2.9303 0.0009 8 6 3.0115 -3.3480 -0.0043 9 6 2.6870 -4.8196 -0.0057 10 6 2.5761 -5.3161 -1.4486 11 6 2.2522 -6.7879 -1.4499 12 1 2.1366 -7.3163 -0.5151 13 6 2.0973 -7.4587 -2.6446 14 7 2.2377 -6.8152 -3.7830 15 14 1.6883 -9.2813 -2.6462 16 1 0.3991 -9.4999 -1.9423 17 1 1.5758 -9.7621 -4.0467 18 1 2.7652 -10.0310 -1.9509 19 6 2.0127 -2.4447 -0.0026 20 7 2.2875 -1.1019 -0.0005 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3633 -0.8898 -0.5141 24 1 4.3972 1.3821 -0.0011 25 1 5.6785 -1.2720 -0.0025 26 1 5.1509 -3.6618 0.0040 27 1 1.7401 -4.9833 0.5087 28 1 3.4782 -5.3667 0.5069 29 1 3.5231 -5.1524 -1.9630 30 1 1.7849 -4.7692 -1.9613 31 1 2.1290 -7.2872 -4.6235 32 1 0.9864 -2.7811 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261210198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = 46.995743 kcal Electronic energy + Delta-G solvation = -15056.235259 eV Core-core repulsion = 12595.442377 eV Total energy + Delta-G solvation = -2460.792883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.73800 -38.98083 -35.77035 -34.53846 -33.87397 -31.76211 -30.40912 -27.51601 -26.94621 -24.40394 -23.40907 -22.51222 -21.35097 -18.55779 -18.35876 -17.59757 -17.00249 -16.52378 -16.20844 -15.68102 -14.90938 -14.57283 -14.44839 -14.17721 -13.97666 -13.60160 -13.29004 -13.13561 -12.85467 -12.64196 -12.43944 -12.40455 -11.77710 -11.70072 -11.48545 -11.32172 -11.22606 -10.55370 -9.95125 -8.34672 -8.19561 -6.31824 -0.09227 0.31465 1.42379 1.44505 1.52465 1.67712 2.02057 2.40777 2.49662 3.13972 3.48943 3.54581 3.75045 3.94072 4.04394 4.08749 4.44874 4.51241 4.63326 4.67583 4.72754 4.82076 4.96128 5.02512 5.13260 5.20553 5.34859 5.49419 5.58086 5.72749 5.74929 5.83097 6.20181 6.24516 6.85500 6.89433 7.38256 8.91305 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042079 B = 0.005401 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.257719 B = 5183.232664 C = 5499.460756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.141 3.859 3 N -0.482 5.482 4 C -0.033 4.033 5 C -0.028 4.028 6 C -0.074 4.074 7 C -0.126 4.126 8 C -0.081 4.081 9 C -0.055 4.055 10 C 0.035 3.965 11 C -0.542 4.542 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.020 3.980 20 N -0.365 5.365 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.205 0.795 25 H 0.179 0.821 26 H 0.150 0.850 27 H 0.073 0.927 28 H 0.078 0.922 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 9.853 8.996 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 N -0.197 5.197 4 C -0.187 4.187 5 C -0.137 4.137 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.084 4.084 9 C -0.093 4.093 10 C -0.002 4.002 11 C -0.580 4.580 12 H 0.085 0.915 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.788 3.212 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.099 4.099 20 N -0.035 5.035 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.099 0.901 24 H 0.222 0.778 25 H 0.196 0.804 26 H 0.168 0.832 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.513 10.644 8.820 13.833 hybrid contribution 0.165 -1.712 -0.556 1.807 sum 0.679 8.932 8.264 12.188 Atomic orbital electron populations 1.20278 0.82389 1.04798 1.04563 1.23830 0.97103 0.79377 1.11079 1.69917 1.03361 1.28270 1.18202 1.22973 0.94964 0.90752 1.10032 1.20181 0.84676 0.96189 1.12627 1.20847 0.98850 0.90825 0.98751 1.21317 0.96070 0.96643 1.00613 1.19908 0.93316 0.96642 0.98505 1.20508 1.02197 0.88186 0.98458 1.18934 0.94939 0.94795 0.91501 1.21672 1.47871 0.95605 0.92855 0.91493 1.25970 0.95155 1.03359 0.95239 1.70104 1.50970 1.38386 0.98048 0.85516 0.79295 0.79284 0.77057 1.19050 1.21271 1.19028 1.21572 1.01729 0.79693 1.06910 1.42870 1.08455 1.06257 1.45940 0.88796 0.88305 0.90143 0.77790 0.80418 0.83223 0.90843 0.90384 0.99023 0.99247 0.92847 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.34 10.33 71.24 0.74 -0.61 16 2 C 0.14 4.28 7.96 138.01 1.10 5.38 16 3 N -0.48 -15.48 11.19 -185.92 -2.08 -17.57 16 4 C -0.03 -0.94 12.02 84.40 1.01 0.07 16 5 C -0.03 -0.85 6.80 38.77 0.26 -0.58 16 6 C -0.07 -1.96 10.11 22.39 0.23 -1.73 16 7 C -0.13 -3.74 9.73 22.35 0.22 -3.53 16 8 C -0.08 -2.73 5.10 -20.06 -0.10 -2.83 16 9 C -0.06 -2.08 5.26 29.85 0.16 -1.92 16 10 C 0.04 1.77 4.96 29.85 0.15 1.92 16 11 C -0.54 -29.33 9.11 25.60 0.23 -29.10 16 12 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 13 C 0.00 0.03 5.46 84.66 0.46 0.50 16 14 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 15 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.02 0.64 10.40 83.06 0.86 1.51 16 20 N -0.36 -11.78 2.94 -337.91 -0.99 -12.78 16 21 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 24 H 0.21 4.36 8.06 -2.91 -0.02 4.34 16 25 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 26 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 28 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 29 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 32 H 0.17 4.92 7.98 -2.91 -0.02 4.90 16 Total: -1.00 -67.62 280.48 5.65 -61.97 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.10 Total: 10.18 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 5.32 Total: -30.93 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.79 Total: -86.05 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.62 5.65 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261210198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.963 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds