Wall clock time and date at job start Mon Mar 30 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33519 * 125.68342 * 2 1 4 4 C 1.32560 * 109.15824 * 179.97438 * 3 2 1 5 5 C 1.40936 * 132.33095 * 180.02562 * 4 3 2 6 6 C 1.36014 * 119.33030 * 180.02562 * 5 4 3 7 7 C 1.40476 * 119.69451 * 359.97438 * 6 5 4 8 8 C 1.34953 * 120.30163 * 359.97438 * 7 6 5 9 9 N 1.36486 * 120.60537 * 0.02562 * 8 7 6 10 10 C 1.35106 * 125.68980 * 179.97438 * 2 1 3 11 11 C 1.50698 * 126.40865 * 359.97438 * 10 2 1 12 12 H 1.09000 * 109.47174 * 180.02562 * 11 10 2 13 13 C 1.53007 * 109.47103 * 60.01824 * 11 10 2 14 14 C 1.50696 * 109.47070 * 300.02375 * 11 10 2 15 15 H 1.08001 * 120.00392 * 25.17402 * 14 11 10 16 16 C 1.37878 * 120.00057 * 205.18425 * 14 11 10 17 17 N 1.31517 * 120.00345 * 186.36997 * 16 14 11 18 18 Si 1.86803 * 119.99778 * 6.36331 * 16 14 11 19 19 H 1.48508 * 109.46974 * 84.86904 * 18 16 14 20 20 H 1.48497 * 109.47373 * 204.86259 * 18 16 14 21 21 H 1.48493 * 109.47251 * 324.86993 * 18 16 14 22 22 H 1.08997 * 109.46811 * 90.02539 * 1 2 3 23 23 H 1.08994 * 109.46959 * 210.02641 * 1 2 3 24 24 H 1.09001 * 109.47455 * 330.02493 * 1 2 3 25 25 H 1.08002 * 120.33002 * 0.03753 * 5 4 3 26 26 H 1.08001 * 120.15231 * 179.97438 * 6 5 4 27 27 H 1.08005 * 119.84990 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.69778 * 179.97438 * 8 7 6 29 29 H 1.08999 * 109.47175 * 294.39442 * 13 11 10 30 30 H 1.09004 * 109.46663 * 54.39285 * 13 11 10 31 31 H 1.08997 * 109.46774 * 174.39184 * 13 11 10 32 32 H 0.96999 * 120.00104 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2858 1.0845 0.0000 4 6 3.5567 0.7075 0.0006 5 6 4.7629 1.4364 0.0013 6 6 5.9464 0.7661 0.0012 7 6 5.9505 -0.6387 0.0010 8 6 4.7874 -1.3230 0.0014 9 7 3.5928 -0.6629 0.0014 10 6 2.2952 -1.0973 0.0005 11 6 1.8320 -2.5313 0.0017 12 1 2.6982 -3.1930 0.0023 13 6 0.9888 -2.7960 -1.2474 14 6 1.0016 -2.7899 1.2323 15 1 0.4871 -1.9739 1.7180 16 6 0.8986 -4.0683 1.7384 17 7 0.0768 -4.3171 2.7346 18 14 1.9264 -5.4472 1.0090 19 1 3.2685 -5.4536 1.6446 20 1 1.2555 -6.7487 1.2562 21 1 2.0723 -5.2353 -0.4535 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 4.7476 2.5163 0.0021 26 1 6.8787 1.3113 0.0013 27 1 6.8889 -1.1735 0.0005 28 1 4.8020 -2.4029 0.0008 29 1 0.0730 -2.2069 -1.1990 30 1 1.5557 -2.5142 -2.1347 31 1 0.7372 -3.8553 -1.2981 32 1 0.0041 -5.2165 3.0903 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:17 Heat of formation + Delta-G solvation = 77.130658 kcal Electronic energy + Delta-G solvation = -15883.294450 eV Core-core repulsion = 13423.808315 eV Total energy + Delta-G solvation = -2459.486135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25884 -37.18962 -34.67412 -33.06248 -31.72577 -30.40903 -28.23313 -26.66031 -25.25798 -23.05485 -22.23117 -20.76640 -19.35212 -17.22435 -16.65119 -16.26282 -15.35999 -15.25589 -14.46485 -14.35133 -13.35014 -12.85726 -12.49864 -12.38730 -12.29308 -12.09271 -11.70139 -11.52699 -11.36610 -11.05359 -10.92332 -10.67199 -10.46430 -10.26965 -9.83856 -9.50494 -9.06900 -8.65062 -8.09168 -7.04703 -6.18691 -4.18879 1.12947 1.78238 3.14893 3.16565 3.25555 3.27210 3.48513 3.97463 4.29327 4.65811 4.87808 5.10878 5.15369 5.18489 5.40223 5.80460 5.89400 5.97968 6.04077 6.27453 6.35571 6.37685 6.40270 6.50501 6.57916 6.65563 6.83042 6.95304 6.97356 7.26071 7.42023 7.55877 7.69229 8.37583 8.53224 8.87068 9.41190 10.93478 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.009932 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.831025 B = 2818.477460 C = 3412.442017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.051 3.949 3 N -0.493 5.493 4 C 0.192 3.808 5 C -0.076 4.076 6 C -0.118 4.118 7 C -0.163 4.163 8 C 0.071 3.929 9 N -0.366 5.366 10 C 0.006 3.994 11 C 0.084 3.916 12 H 0.030 0.970 13 C -0.137 4.137 14 C -0.510 4.510 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.867 3.133 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.142 0.858 26 H 0.133 0.867 27 H 0.142 0.858 28 H 0.156 0.844 29 H 0.059 0.941 30 H 0.022 0.978 31 H 0.051 0.949 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.331 5.214 -6.673 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 N -0.215 5.215 4 C -0.050 4.050 5 C -0.097 4.097 6 C -0.141 4.141 7 C -0.184 4.184 8 C -0.051 4.051 9 N -0.039 5.039 10 C -0.107 4.107 11 C 0.064 3.936 12 H 0.048 0.952 13 C -0.195 4.195 14 C -0.548 4.548 15 H 0.103 0.897 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.694 3.306 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.186 1.186 22 H 0.080 0.920 23 H 0.119 0.881 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.151 0.849 27 H 0.160 0.840 28 H 0.173 0.827 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.901 5.827 -6.539 12.487 hybrid contribution 1.021 -1.700 -0.156 1.989 sum 9.922 4.127 -6.695 12.661 Atomic orbital electron populations 1.20340 0.87133 1.04001 1.01779 1.20536 0.96642 0.87023 1.03730 1.70523 0.98228 1.29999 1.22700 1.20754 0.94497 0.80608 1.09132 1.20113 0.88145 0.99907 1.01518 1.20830 0.97718 0.93901 1.01692 1.20611 0.96847 0.94691 1.06294 1.21571 0.83498 0.98963 1.01086 1.42776 1.05937 1.08661 1.46497 1.21874 0.79583 0.99458 1.09823 1.17721 0.95247 0.84225 0.96415 0.95233 1.22087 1.00324 1.01112 0.95997 1.20886 1.29349 0.95369 1.09213 0.89668 1.24969 0.94886 0.98180 0.94599 1.69877 1.35828 1.21434 1.25720 0.87053 0.80997 0.82144 0.80439 1.20299 1.21145 1.18557 0.92043 0.88134 0.92100 0.84059 0.84863 0.83997 0.82689 0.92196 0.95893 0.93020 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 8.73 36.01 0.31 -1.15 16 2 C 0.05 1.12 6.81 -82.97 -0.57 0.55 16 3 N -0.49 -10.75 11.32 -9.00 -0.10 -10.85 16 4 C 0.19 3.82 7.81 -156.04 -1.22 2.60 16 5 C -0.08 -1.17 10.11 -39.36 -0.40 -1.56 16 6 C -0.12 -1.48 10.07 -39.54 -0.40 -1.88 16 7 C -0.16 -2.13 9.99 -39.91 -0.40 -2.52 16 8 C 0.07 1.18 10.74 -16.65 -0.18 1.00 16 9 N -0.37 -7.41 2.95 -58.46 -0.17 -7.58 16 10 C 0.01 0.12 5.75 -81.47 -0.47 -0.35 16 11 C 0.08 1.93 2.06 -92.92 -0.19 1.74 16 12 H 0.03 0.67 5.15 -51.93 -0.27 0.40 16 13 C -0.14 -2.84 8.74 37.16 0.32 -2.52 16 14 C -0.51 -13.58 7.89 -34.44 -0.27 -13.85 16 15 H 0.09 2.47 6.33 -52.49 -0.33 2.14 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 18 Si 0.87 20.24 26.32 -169.99 -4.47 15.76 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -5.73 6.01 56.52 0.34 -5.39 16 22 H 0.06 1.06 7.96 -51.93 -0.41 0.65 16 23 H 0.10 2.12 5.16 -51.93 -0.27 1.86 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.16 2.34 7.55 -52.49 -0.40 1.94 16 29 H 0.06 1.20 6.24 -51.93 -0.32 0.87 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.07 6.58 -51.93 -0.34 0.73 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 262.66 15.07 3.96 3.96 Total: -1.00 -31.12 262.66 -7.22 -38.34 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.65 Total: 1.64 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.55 Total: -15.95 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.50 Total: -43.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.47 Total: 15.76 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.12 -7.22 -38.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.469 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds