Wall clock time and date at job start Mon Mar 30 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33519 * 125.68342 * 2 1 4 4 C 1.32560 * 109.15824 * 179.97438 * 3 2 1 5 5 C 1.40936 * 132.33095 * 180.02562 * 4 3 2 6 6 C 1.36014 * 119.33030 * 180.02562 * 5 4 3 7 7 C 1.40476 * 119.69451 * 359.97438 * 6 5 4 8 8 C 1.34953 * 120.30163 * 359.97438 * 7 6 5 9 9 N 1.36486 * 120.60537 * 0.02562 * 8 7 6 10 10 C 1.35106 * 125.68980 * 179.97438 * 2 1 3 11 11 C 1.50698 * 126.40865 * 359.97438 * 10 2 1 12 12 H 1.09000 * 109.47174 * 180.02562 * 11 10 2 13 13 C 1.53007 * 109.47103 * 60.01824 * 11 10 2 14 14 C 1.50696 * 109.47070 * 300.02375 * 11 10 2 15 15 H 1.08001 * 120.00392 * 25.17402 * 14 11 10 16 16 C 1.37878 * 120.00057 * 205.18425 * 14 11 10 17 17 N 1.31517 * 120.00345 * 186.36997 * 16 14 11 18 18 Si 1.86803 * 119.99778 * 6.36331 * 16 14 11 19 19 H 1.48508 * 109.46974 * 84.86904 * 18 16 14 20 20 H 1.48497 * 109.47373 * 204.86259 * 18 16 14 21 21 H 1.48493 * 109.47251 * 324.86993 * 18 16 14 22 22 H 1.08997 * 109.46811 * 90.02539 * 1 2 3 23 23 H 1.08994 * 109.46959 * 210.02641 * 1 2 3 24 24 H 1.09001 * 109.47455 * 330.02493 * 1 2 3 25 25 H 1.08002 * 120.33002 * 0.03753 * 5 4 3 26 26 H 1.08001 * 120.15231 * 179.97438 * 6 5 4 27 27 H 1.08005 * 119.84990 * 179.97438 * 7 6 5 28 28 H 1.07997 * 119.69778 * 179.97438 * 8 7 6 29 29 H 1.08999 * 109.47175 * 294.39442 * 13 11 10 30 30 H 1.09004 * 109.46663 * 54.39285 * 13 11 10 31 31 H 1.08997 * 109.46774 * 174.39184 * 13 11 10 32 32 H 0.96999 * 120.00104 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2858 1.0845 0.0000 4 6 3.5567 0.7075 0.0006 5 6 4.7629 1.4364 0.0013 6 6 5.9464 0.7661 0.0012 7 6 5.9505 -0.6387 0.0010 8 6 4.7874 -1.3230 0.0014 9 7 3.5928 -0.6629 0.0014 10 6 2.2952 -1.0973 0.0005 11 6 1.8320 -2.5313 0.0017 12 1 2.6982 -3.1930 0.0023 13 6 0.9888 -2.7960 -1.2474 14 6 1.0016 -2.7899 1.2323 15 1 0.4871 -1.9739 1.7180 16 6 0.8986 -4.0683 1.7384 17 7 0.0768 -4.3171 2.7346 18 14 1.9264 -5.4472 1.0090 19 1 3.2685 -5.4536 1.6446 20 1 1.2555 -6.7487 1.2562 21 1 2.0723 -5.2353 -0.4535 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 4.7476 2.5163 0.0021 26 1 6.8787 1.3113 0.0013 27 1 6.8889 -1.1735 0.0005 28 1 4.8020 -2.4029 0.0008 29 1 0.0730 -2.2069 -1.1990 30 1 1.5557 -2.5142 -2.1347 31 1 0.7372 -3.8553 -1.2981 32 1 0.0041 -5.2165 3.0903 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:17 Heat of formation + Delta-G solvation = 58.342871 kcal Electronic energy + Delta-G solvation = -15884.109149 eV Core-core repulsion = 13423.808315 eV Total energy + Delta-G solvation = -2460.300834 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.68534 -38.49745 -36.42542 -34.48241 -33.59616 -31.86026 -29.64947 -28.10105 -27.20535 -24.48286 -23.57627 -22.34871 -20.89651 -19.09770 -18.19185 -17.54352 -16.86438 -16.52434 -16.16873 -15.65586 -15.02622 -14.59487 -14.16828 -14.04275 -13.78258 -13.40098 -13.24359 -13.05084 -12.85855 -12.70507 -12.44280 -12.25806 -11.98572 -11.78146 -11.63120 -11.26334 -10.84283 -10.68667 -9.47027 -8.50993 -8.27678 -6.32327 -0.06408 0.48414 1.32319 1.35263 1.45276 1.78514 1.98200 2.33536 2.67564 3.06695 3.36809 3.66545 3.89598 4.08397 4.24539 4.34666 4.36455 4.60509 4.65140 4.78747 4.85061 4.87027 5.01405 5.11007 5.17422 5.21557 5.27241 5.34382 5.54458 5.64214 5.75808 5.86413 6.24359 6.38302 6.73465 7.01473 7.30970 8.87876 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.009932 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.831025 B = 2818.477460 C = 3412.442017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.032 3.968 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.102 4.102 6 C -0.085 4.085 7 C -0.135 4.135 8 C 0.028 3.972 9 N -0.373 5.373 10 C -0.035 4.035 11 C 0.091 3.909 12 H 0.034 0.966 13 C -0.132 4.132 14 C -0.506 4.506 15 H 0.044 0.956 16 C 0.017 3.983 17 N -0.944 5.944 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.236 1.236 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.164 0.836 26 H 0.186 0.814 27 H 0.190 0.810 28 H 0.163 0.837 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.171 5.396 -8.217 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 N -0.255 5.255 4 C -0.056 4.056 5 C -0.123 4.123 6 C -0.109 4.109 7 C -0.156 4.156 8 C -0.093 4.093 9 N -0.045 5.045 10 C -0.148 4.148 11 C 0.071 3.929 12 H 0.052 0.948 13 C -0.190 4.190 14 C -0.545 4.545 15 H 0.062 0.938 16 C -0.180 4.180 17 N -0.583 5.583 18 Si 0.754 3.246 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.159 1.159 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.182 0.818 26 H 0.204 0.796 27 H 0.208 0.792 28 H 0.181 0.819 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.755 6.009 -8.105 16.263 hybrid contribution 0.033 -1.588 0.354 1.627 sum 12.788 4.421 -7.751 15.593 Atomic orbital electron populations 1.20242 0.86696 1.02930 1.02638 1.20810 0.97388 0.87562 1.04007 1.70475 0.99433 1.30151 1.25393 1.21570 0.95311 0.81080 1.07660 1.20583 0.87349 1.01203 1.03121 1.21511 0.98627 0.93891 0.96844 1.21315 0.97259 0.95226 1.01765 1.22170 0.83413 1.00041 1.03707 1.42879 1.06231 1.08998 1.46385 1.21611 0.81051 0.98866 1.13267 1.17538 0.94833 0.85262 0.95275 0.94820 1.21979 1.00220 1.00987 0.95811 1.21059 1.28944 0.94236 1.10220 0.93786 1.25821 0.96106 1.00994 0.95092 1.70038 1.38209 1.22095 1.28003 0.86024 0.79246 0.78308 0.81053 1.19370 1.21296 1.15923 0.90148 0.90610 0.91567 0.81839 0.79645 0.79250 0.81925 0.92396 0.93862 0.93071 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.77 8.73 71.24 0.62 -2.15 16 2 C 0.03 1.47 6.81 41.58 0.28 1.75 16 3 N -0.53 -23.60 11.32 -182.39 -2.06 -25.67 16 4 C 0.19 7.26 7.81 134.10 1.05 8.31 16 5 C -0.10 -2.79 10.11 22.41 0.23 -2.56 16 6 C -0.09 -1.65 10.07 22.30 0.22 -1.42 16 7 C -0.14 -2.79 9.99 22.06 0.22 -2.57 16 8 C 0.03 0.85 10.74 83.21 0.89 1.75 16 9 N -0.37 -14.80 2.95 -338.87 -1.00 -15.80 16 10 C -0.04 -1.59 5.75 41.06 0.24 -1.35 16 11 C 0.09 4.22 2.06 -12.29 -0.03 4.19 16 12 H 0.03 1.50 5.15 -2.39 -0.01 1.49 16 13 C -0.13 -5.43 8.74 71.98 0.63 -4.80 16 14 C -0.51 -28.06 7.89 25.60 0.20 -27.86 16 15 H 0.04 2.74 6.33 -2.91 -0.02 2.72 16 16 C 0.02 0.98 5.47 84.65 0.46 1.44 16 17 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 18 Si 0.93 41.71 26.32 68.60 1.81 43.52 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.24 -9.54 6.01 99.48 0.60 -8.94 16 22 H 0.08 2.88 7.96 -2.39 -0.02 2.86 16 23 H 0.08 3.46 5.16 -2.39 -0.01 3.45 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 26 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 28 H 0.16 4.51 7.55 -2.91 -0.02 4.49 16 29 H 0.06 2.36 6.24 -2.39 -0.01 2.34 16 30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 2.06 6.58 -2.39 -0.02 2.04 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -72.12 262.66 5.08 -67.04 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.02 Total: 13.44 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 5.02 Total: -25.28 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -2.76 Total: -98.72 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.81 Total: 43.52 kcal Total: -72.12 5.08 -67.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.386 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds