Wall clock time and date at job start Mon Mar 30 2020 03:23:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.33519 * 125.68342 * 2 1
4 4 C 1.32560 * 109.15824 * 179.97438 * 3 2 1
5 5 C 1.40936 * 132.33095 * 180.02562 * 4 3 2
6 6 C 1.36014 * 119.33030 * 180.02562 * 5 4 3
7 7 C 1.40476 * 119.69451 * 359.97438 * 6 5 4
8 8 C 1.34953 * 120.30163 * 359.97438 * 7 6 5
9 9 N 1.36486 * 120.60537 * 0.02562 * 8 7 6
10 10 C 1.35106 * 125.68980 * 179.97438 * 2 1 3
11 11 C 1.50698 * 126.40865 * 359.97438 * 10 2 1
12 12 H 1.09000 * 109.47174 * 180.02562 * 11 10 2
13 13 C 1.53007 * 109.47103 * 60.01824 * 11 10 2
14 14 C 1.50696 * 109.47070 * 300.02375 * 11 10 2
15 15 H 1.08001 * 120.00392 * 25.17402 * 14 11 10
16 16 C 1.37878 * 120.00057 * 205.18425 * 14 11 10
17 17 N 1.31517 * 120.00345 * 186.36997 * 16 14 11
18 18 Si 1.86803 * 119.99778 * 6.36331 * 16 14 11
19 19 H 1.48508 * 109.46974 * 84.86904 * 18 16 14
20 20 H 1.48497 * 109.47373 * 204.86259 * 18 16 14
21 21 H 1.48493 * 109.47251 * 324.86993 * 18 16 14
22 22 H 1.08997 * 109.46811 * 90.02539 * 1 2 3
23 23 H 1.08994 * 109.46959 * 210.02641 * 1 2 3
24 24 H 1.09001 * 109.47455 * 330.02493 * 1 2 3
25 25 H 1.08002 * 120.33002 * 0.03753 * 5 4 3
26 26 H 1.08001 * 120.15231 * 179.97438 * 6 5 4
27 27 H 1.08005 * 119.84990 * 179.97438 * 7 6 5
28 28 H 1.07997 * 119.69778 * 179.97438 * 8 7 6
29 29 H 1.08999 * 109.47175 * 294.39442 * 13 11 10
30 30 H 1.09004 * 109.46663 * 54.39285 * 13 11 10
31 31 H 1.08997 * 109.46774 * 174.39184 * 13 11 10
32 32 H 0.96999 * 120.00104 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2858 1.0845 0.0000
4 6 3.5567 0.7075 0.0006
5 6 4.7629 1.4364 0.0013
6 6 5.9464 0.7661 0.0012
7 6 5.9505 -0.6387 0.0010
8 6 4.7874 -1.3230 0.0014
9 7 3.5928 -0.6629 0.0014
10 6 2.2952 -1.0973 0.0005
11 6 1.8320 -2.5313 0.0017
12 1 2.6982 -3.1930 0.0023
13 6 0.9888 -2.7960 -1.2474
14 6 1.0016 -2.7899 1.2323
15 1 0.4871 -1.9739 1.7180
16 6 0.8986 -4.0683 1.7384
17 7 0.0768 -4.3171 2.7346
18 14 1.9264 -5.4472 1.0090
19 1 3.2685 -5.4536 1.6446
20 1 1.2555 -6.7487 1.2562
21 1 2.0723 -5.2353 -0.4535
22 1 -0.3633 -0.0005 -1.0277
23 1 -0.3633 -0.8897 0.5142
24 1 -0.3634 0.8902 0.5134
25 1 4.7476 2.5163 0.0021
26 1 6.8787 1.3113 0.0013
27 1 6.8889 -1.1735 0.0005
28 1 4.8020 -2.4029 0.0008
29 1 0.0730 -2.2069 -1.1990
30 1 1.5557 -2.5142 -2.1347
31 1 0.7372 -3.8553 -1.2981
32 1 0.0041 -5.2165 3.0903
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261213258.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:17
Heat of formation + Delta-G solvation = 58.342871 kcal
Electronic energy + Delta-G solvation = -15884.109149 eV
Core-core repulsion = 13423.808315 eV
Total energy + Delta-G solvation = -2460.300834 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-43.68534 -38.49745 -36.42542 -34.48241 -33.59616 -31.86026 -29.64947 -28.10105
-27.20535 -24.48286 -23.57627 -22.34871 -20.89651 -19.09770 -18.19185 -17.54352
-16.86438 -16.52434 -16.16873 -15.65586 -15.02622 -14.59487 -14.16828 -14.04275
-13.78258 -13.40098 -13.24359 -13.05084 -12.85855 -12.70507 -12.44280 -12.25806
-11.98572 -11.78146 -11.63120 -11.26334 -10.84283 -10.68667 -9.47027 -8.50993
-8.27678 -6.32327 -0.06408 0.48414 1.32319 1.35263 1.45276 1.78514
1.98200 2.33536 2.67564 3.06695 3.36809 3.66545 3.89598 4.08397
4.24539 4.34666 4.36455 4.60509 4.65140 4.78747 4.85061 4.87027
5.01405 5.11007 5.17422 5.21557 5.27241 5.34382 5.54458 5.64214
5.75808 5.86413 6.24359 6.38302 6.73465 7.01473 7.30970 8.87876
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.027639 B = 0.009932 C = 0.008203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1012.831025 B = 2818.477460 C = 3412.442017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C 0.032 3.968
3 N -0.532 5.532
4 C 0.187 3.813
5 C -0.102 4.102
6 C -0.085 4.085
7 C -0.135 4.135
8 C 0.028 3.972
9 N -0.373 5.373
10 C -0.035 4.035
11 C 0.091 3.909
12 H 0.034 0.966
13 C -0.132 4.132
14 C -0.506 4.506
15 H 0.044 0.956
16 C 0.017 3.983
17 N -0.944 5.944
18 Si 0.930 3.070
19 H -0.268 1.268
20 H -0.287 1.287
21 H -0.236 1.236
22 H 0.080 0.920
23 H 0.075 0.925
24 H 0.065 0.935
25 H 0.164 0.836
26 H 0.186 0.814
27 H 0.190 0.810
28 H 0.163 0.837
29 H 0.057 0.943
30 H 0.042 0.958
31 H 0.050 0.950
32 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.171 5.396 -8.217 16.435
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.098 4.098
3 N -0.255 5.255
4 C -0.056 4.056
5 C -0.123 4.123
6 C -0.109 4.109
7 C -0.156 4.156
8 C -0.093 4.093
9 N -0.045 5.045
10 C -0.148 4.148
11 C 0.071 3.929
12 H 0.052 0.948
13 C -0.190 4.190
14 C -0.545 4.545
15 H 0.062 0.938
16 C -0.180 4.180
17 N -0.583 5.583
18 Si 0.754 3.246
19 H -0.194 1.194
20 H -0.213 1.213
21 H -0.159 1.159
22 H 0.099 0.901
23 H 0.094 0.906
24 H 0.084 0.916
25 H 0.182 0.818
26 H 0.204 0.796
27 H 0.208 0.792
28 H 0.181 0.819
29 H 0.076 0.924
30 H 0.061 0.939
31 H 0.069 0.931
32 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 12.755 6.009 -8.105 16.263
hybrid contribution 0.033 -1.588 0.354 1.627
sum 12.788 4.421 -7.751 15.593
Atomic orbital electron populations
1.20242 0.86696 1.02930 1.02638 1.20810 0.97388 0.87562 1.04007
1.70475 0.99433 1.30151 1.25393 1.21570 0.95311 0.81080 1.07660
1.20583 0.87349 1.01203 1.03121 1.21511 0.98627 0.93891 0.96844
1.21315 0.97259 0.95226 1.01765 1.22170 0.83413 1.00041 1.03707
1.42879 1.06231 1.08998 1.46385 1.21611 0.81051 0.98866 1.13267
1.17538 0.94833 0.85262 0.95275 0.94820 1.21979 1.00220 1.00987
0.95811 1.21059 1.28944 0.94236 1.10220 0.93786 1.25821 0.96106
1.00994 0.95092 1.70038 1.38209 1.22095 1.28003 0.86024 0.79246
0.78308 0.81053 1.19370 1.21296 1.15923 0.90148 0.90610 0.91567
0.81839 0.79645 0.79250 0.81925 0.92396 0.93862 0.93071 0.92478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.77 8.73 71.24 0.62 -2.15 16
2 C 0.03 1.47 6.81 41.58 0.28 1.75 16
3 N -0.53 -23.60 11.32 -182.39 -2.06 -25.67 16
4 C 0.19 7.26 7.81 134.10 1.05 8.31 16
5 C -0.10 -2.79 10.11 22.41 0.23 -2.56 16
6 C -0.09 -1.65 10.07 22.30 0.22 -1.42 16
7 C -0.14 -2.79 9.99 22.06 0.22 -2.57 16
8 C 0.03 0.85 10.74 83.21 0.89 1.75 16
9 N -0.37 -14.80 2.95 -338.87 -1.00 -15.80 16
10 C -0.04 -1.59 5.75 41.06 0.24 -1.35 16
11 C 0.09 4.22 2.06 -12.29 -0.03 4.19 16
12 H 0.03 1.50 5.15 -2.39 -0.01 1.49 16
13 C -0.13 -5.43 8.74 71.98 0.63 -4.80 16
14 C -0.51 -28.06 7.89 25.60 0.20 -27.86 16
15 H 0.04 2.74 6.33 -2.91 -0.02 2.72 16
16 C 0.02 0.98 5.47 84.65 0.46 1.44 16
17 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16
18 Si 0.93 41.71 26.32 68.60 1.81 43.52 16
19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16
21 H -0.24 -9.54 6.01 99.48 0.60 -8.94 16
22 H 0.08 2.88 7.96 -2.39 -0.02 2.86 16
23 H 0.08 3.46 5.16 -2.39 -0.01 3.45 16
24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
25 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16
26 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16
27 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16
28 H 0.16 4.51 7.55 -2.91 -0.02 4.49 16
29 H 0.06 2.36 6.24 -2.39 -0.01 2.34 16
30 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16
31 H 0.05 2.06 6.58 -2.39 -0.02 2.04 16
32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16
Total: -1.00 -72.12 262.66 5.08 -67.04
By element:
Atomic # 1 Polarization: 12.42 SS G_CDS: 1.02 Total: 13.44 kcal
Atomic # 6 Polarization: -30.31 SS G_CDS: 5.02 Total: -25.28 kcal
Atomic # 7 Polarization: -95.95 SS G_CDS: -2.76 Total: -98.72 kcal
Atomic # 14 Polarization: 41.71 SS G_CDS: 1.81 Total: 43.52 kcal
Total: -72.12 5.08 -67.04 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261213258.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.386 kcal
(2) G-P(sol) polarization free energy of solvation -72.125 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds