Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36061 * 120.38465 * 2 1 4 4 C 1.40477 * 119.58974 * 179.79364 * 3 2 1 5 5 C 1.34942 * 120.42780 * 0.44617 * 4 3 2 6 6 N 1.36535 * 120.65904 * 359.81218 * 5 4 3 7 7 N 1.40036 * 132.42937 * 179.97438 * 6 5 4 8 8 C 1.31486 * 108.91684 * 180.02562 * 7 6 5 9 9 C 1.38542 * 109.00528 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.22059 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47201 * 264.97464 * 10 9 8 12 12 C 1.50702 * 109.47103 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00018 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00153 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00318 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46832 * 90.00420 * 16 14 12 18 18 H 1.48497 * 109.47336 * 210.00300 * 16 14 12 19 19 H 1.48498 * 109.47023 * 330.00323 * 16 14 12 20 20 C 1.37133 * 120.12594 * 359.97438 * 6 5 4 21 21 H 1.09002 * 109.47152 * 269.72344 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72444 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72425 * 1 2 3 24 24 H 1.07997 * 120.21145 * 0.02562 * 3 2 1 25 25 H 1.07992 * 119.79025 * 180.25561 * 4 3 2 26 26 H 1.08004 * 119.66671 * 179.78842 * 5 4 3 27 27 H 1.07998 * 125.50026 * 179.97438 * 8 7 6 28 28 H 1.09011 * 109.46624 * 24.97472 * 10 9 8 29 29 H 1.08995 * 109.47560 * 144.96795 * 10 9 8 30 30 H 1.08994 * 109.47103 * 299.99518 * 11 10 9 31 31 H 1.08997 * 109.46814 * 59.99954 * 11 10 9 32 32 H 0.96998 * 120.00350 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1737 0.0000 4 6 3.5999 1.1542 0.0044 5 6 4.2671 -0.0187 -0.0005 6 7 3.5905 -1.2046 -0.0059 7 7 4.0200 -2.5374 -0.0119 8 6 2.9669 -3.3247 -0.0161 9 6 1.8213 -2.5457 -0.0123 10 6 0.4013 -3.0503 -0.0145 11 6 -0.1218 -3.0953 -1.4516 12 6 -1.5416 -3.6006 -1.4538 13 1 -2.0229 -3.8629 -0.5233 14 6 -2.2261 -3.7279 -2.6438 15 7 -3.4653 -4.1684 -2.6457 16 14 -1.3939 -3.2735 -4.2533 17 1 -0.7054 -4.4663 -4.8085 18 1 -2.4144 -2.7960 -5.2207 19 1 -0.4004 -2.1969 -4.0101 20 6 2.2192 -1.2146 -0.0059 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5096 24 1 1.6650 2.1146 0.0004 25 1 4.1493 2.0839 0.0086 26 1 5.3471 -0.0193 -0.0004 27 1 2.9910 -4.4044 -0.0215 28 1 0.3710 -4.0519 0.4148 29 1 -0.2229 -2.3819 0.5786 30 1 -0.0915 -2.0939 -1.8808 31 1 0.5023 -3.7638 -2.0446 32 1 -3.9470 -4.2576 -3.4829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = 90.292906 kcal Electronic energy + Delta-G solvation = -15519.983688 eV Core-core repulsion = 13061.068311 eV Total energy + Delta-G solvation = -2458.915377 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.78281 -37.20771 -35.02590 -33.01852 -31.35999 -30.60342 -28.66843 -26.90990 -24.70502 -22.74448 -22.21945 -20.90535 -19.57155 -17.09053 -16.64086 -16.41763 -15.50824 -15.37897 -14.20133 -13.99691 -13.59119 -13.36386 -12.99375 -12.73485 -12.57098 -12.27766 -11.68426 -11.62706 -11.24743 -11.18086 -10.83848 -10.54422 -10.26104 -9.77627 -9.71600 -9.50535 -9.13721 -9.09644 -8.51298 -7.06865 -6.02621 -4.00246 0.94850 1.30804 2.51409 3.02007 3.32626 3.40104 3.45456 3.56258 4.43718 4.47505 4.78270 4.88663 5.01341 5.09146 5.32176 5.58963 5.68176 5.72261 5.78335 5.93155 6.04445 6.15490 6.34852 6.39291 6.55474 6.63491 6.72377 6.76561 7.03731 7.14083 7.40786 7.47216 7.81444 7.84976 8.55732 9.03033 9.60840 11.10711 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031320 B = 0.007593 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.779466 B = 3686.912843 C = 3950.176460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C -0.117 4.117 4 C -0.159 4.159 5 C 0.092 3.908 6 N -0.278 5.278 7 N -0.328 5.328 8 C 0.072 3.928 9 C -0.215 4.215 10 C -0.033 4.033 11 C -0.009 4.009 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.091 3.909 21 H 0.075 0.925 22 H 0.105 0.895 23 H 0.069 0.931 24 H 0.135 0.865 25 H 0.148 0.852 26 H 0.160 0.840 27 H 0.190 0.810 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.016 0.984 31 H 0.011 0.989 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 10.465 5.517 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.182 4.182 5 C -0.032 4.032 6 N -0.046 5.046 7 N -0.153 5.153 8 C -0.103 4.103 9 C -0.226 4.226 10 C -0.071 4.071 11 C -0.046 4.046 12 C -0.557 4.557 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.027 4.027 21 H 0.094 0.906 22 H 0.123 0.877 23 H 0.088 0.912 24 H 0.153 0.847 25 H 0.165 0.835 26 H 0.177 0.823 27 H 0.207 0.793 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.827 10.314 5.399 18.075 hybrid contribution -0.334 0.177 -1.022 1.090 sum 13.494 10.491 4.376 17.644 Atomic orbital electron populations 1.21132 0.88957 1.05438 1.03202 1.19468 0.97289 0.89806 0.98664 1.20948 0.93631 0.98001 1.01366 1.20698 0.94875 0.96697 1.05884 1.21287 0.98476 0.81705 1.01737 1.46093 1.05509 1.05695 1.47281 1.77749 1.22202 0.83315 1.31995 1.23712 0.89542 1.00188 0.96896 1.20522 0.98101 0.89313 1.14632 1.20028 0.87342 0.99956 0.99772 1.19631 0.96437 0.96515 0.92023 1.21167 0.96130 1.43472 0.94924 0.90842 1.24988 0.94651 0.94655 0.98952 1.69910 1.10413 1.46995 1.26960 0.86851 0.79486 0.79502 0.83935 1.20336 1.21438 1.19036 1.19278 0.83502 0.95582 1.04318 0.90642 0.87661 0.91247 0.84693 0.83457 0.82252 0.79342 0.91674 0.91601 0.96558 0.97050 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.97 36.01 0.32 -1.63 16 2 C -0.05 -0.78 5.90 -104.44 -0.62 -1.39 16 3 C -0.12 -1.43 9.73 -39.52 -0.38 -1.81 16 4 C -0.16 -1.71 9.98 -39.91 -0.40 -2.11 16 5 C 0.09 1.18 11.19 -16.63 -0.19 0.99 16 6 N -0.28 -4.68 3.90 -10.70 -0.04 -4.72 16 7 N -0.33 -5.84 12.66 30.46 0.39 -5.45 16 8 C 0.07 1.25 11.87 -17.59 -0.21 1.04 16 9 C -0.21 -4.01 5.44 -104.25 -0.57 -4.58 16 10 C -0.03 -0.65 4.74 -27.88 -0.13 -0.78 16 11 C -0.01 -0.21 3.50 -27.88 -0.10 -0.30 16 12 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 16 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 20 C 0.09 1.62 6.67 -84.27 -0.56 1.06 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.10 1.91 3.81 -51.93 -0.20 1.72 16 23 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 24 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 25 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 26 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.19 2.69 8.06 -52.49 -0.42 2.26 16 28 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.07 1.27 6.29 -51.93 -0.33 0.95 16 30 H 0.02 0.39 5.77 -51.93 -0.30 0.09 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 268.19 15.07 4.04 4.04 Total: -1.00 -32.72 268.19 -6.53 -39.25 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.76 Total: -1.06 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -3.26 Total: -22.45 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 1.12 Total: -37.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.72 -6.53 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.544 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds