Wall clock time and date at job start Mon Mar 30 2020 03:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36061 * 120.38465 * 2 1 4 4 C 1.40477 * 119.58974 * 179.79364 * 3 2 1 5 5 C 1.34942 * 120.42780 * 0.44617 * 4 3 2 6 6 N 1.36535 * 120.65904 * 359.81218 * 5 4 3 7 7 N 1.40036 * 132.42937 * 179.97438 * 6 5 4 8 8 C 1.31486 * 108.91684 * 180.02562 * 7 6 5 9 9 C 1.38542 * 109.00528 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.22059 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47201 * 264.97464 * 10 9 8 12 12 C 1.50702 * 109.47103 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00018 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00153 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00318 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99912 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46832 * 90.00420 * 16 14 12 18 18 H 1.48497 * 109.47336 * 210.00300 * 16 14 12 19 19 H 1.48498 * 109.47023 * 330.00323 * 16 14 12 20 20 C 1.37133 * 120.12594 * 359.97438 * 6 5 4 21 21 H 1.09002 * 109.47152 * 269.72344 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72444 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72425 * 1 2 3 24 24 H 1.07997 * 120.21145 * 0.02562 * 3 2 1 25 25 H 1.07992 * 119.79025 * 180.25561 * 4 3 2 26 26 H 1.08004 * 119.66671 * 179.78842 * 5 4 3 27 27 H 1.07998 * 125.50026 * 179.97438 * 8 7 6 28 28 H 1.09011 * 109.46624 * 24.97472 * 10 9 8 29 29 H 1.08995 * 109.47560 * 144.96795 * 10 9 8 30 30 H 1.08994 * 109.47103 * 299.99518 * 11 10 9 31 31 H 1.08997 * 109.46814 * 59.99954 * 11 10 9 32 32 H 0.96998 * 120.00350 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1737 0.0000 4 6 3.5999 1.1542 0.0044 5 6 4.2671 -0.0187 -0.0005 6 7 3.5905 -1.2046 -0.0059 7 7 4.0200 -2.5374 -0.0119 8 6 2.9669 -3.3247 -0.0161 9 6 1.8213 -2.5457 -0.0123 10 6 0.4013 -3.0503 -0.0145 11 6 -0.1218 -3.0953 -1.4516 12 6 -1.5416 -3.6006 -1.4538 13 1 -2.0229 -3.8629 -0.5233 14 6 -2.2261 -3.7279 -2.6438 15 7 -3.4653 -4.1684 -2.6457 16 14 -1.3939 -3.2735 -4.2533 17 1 -0.7054 -4.4663 -4.8085 18 1 -2.4144 -2.7960 -5.2207 19 1 -0.4004 -2.1969 -4.0101 20 6 2.2192 -1.2146 -0.0059 21 1 -0.3633 -0.0050 1.0277 22 1 -0.3633 -0.8875 -0.5181 23 1 -0.3633 0.8925 -0.5096 24 1 1.6650 2.1146 0.0004 25 1 4.1493 2.0839 0.0086 26 1 5.3471 -0.0193 -0.0004 27 1 2.9910 -4.4044 -0.0215 28 1 0.3710 -4.0519 0.4148 29 1 -0.2229 -2.3819 0.5786 30 1 -0.0915 -2.0939 -1.8808 31 1 0.5023 -3.7638 -2.0446 32 1 -3.9470 -4.2576 -3.4829 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:18 Heat of formation + Delta-G solvation = 70.353577 kcal Electronic energy + Delta-G solvation = -15520.848322 eV Core-core repulsion = 13061.068311 eV Total energy + Delta-G solvation = -2459.780011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.97009 -38.30382 -36.53778 -34.79953 -33.08442 -31.71687 -30.13654 -28.24577 -26.28261 -23.85824 -23.55568 -22.56594 -20.93866 -18.96424 -18.04824 -17.57072 -16.66210 -16.45503 -16.23240 -15.30650 -14.95246 -14.86787 -14.57791 -14.13650 -13.94107 -13.50680 -13.25607 -13.05134 -12.76629 -12.50934 -12.24764 -12.02712 -11.91814 -11.68351 -11.39775 -11.20775 -10.83695 -10.73623 -10.23905 -8.29482 -8.25921 -6.28976 -0.09900 0.18719 1.33941 1.35108 1.41591 1.47409 1.75353 2.36322 2.47788 3.08717 3.34737 3.71397 3.91566 4.00570 4.08320 4.35496 4.53621 4.59231 4.73930 4.79114 4.80683 4.86447 4.99725 5.09355 5.10752 5.24831 5.40246 5.47721 5.61701 5.66383 5.72924 5.75477 6.01182 6.32961 6.61794 6.78539 7.35421 8.89757 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031320 B = 0.007593 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.779466 B = 3686.912843 C = 3950.176460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 C -0.089 4.089 4 C -0.141 4.141 5 C 0.072 3.928 6 N -0.283 5.283 7 N -0.353 5.353 8 C 0.068 3.932 9 C -0.258 4.258 10 C -0.016 4.016 11 C 0.002 3.998 12 C -0.523 4.523 13 H 0.040 0.960 14 C 0.011 3.989 15 N -0.948 5.948 16 Si 0.940 3.060 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.255 1.255 20 C 0.086 3.914 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.172 0.828 25 H 0.199 0.801 26 H 0.191 0.809 27 H 0.207 0.793 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.006 0.994 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.940 13.461 5.032 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 C -0.111 4.111 4 C -0.162 4.162 5 C -0.051 4.051 6 N -0.050 5.050 7 N -0.178 5.178 8 C -0.106 4.106 9 C -0.270 4.270 10 C -0.055 4.055 11 C -0.035 4.035 12 C -0.561 4.561 13 H 0.058 0.942 14 C -0.185 4.185 15 N -0.589 5.589 16 Si 0.765 3.235 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.179 1.179 20 C -0.033 4.033 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.190 0.810 25 H 0.216 0.784 26 H 0.208 0.792 27 H 0.223 0.777 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.161 13.307 4.926 21.506 hybrid contribution -1.009 -0.558 -0.773 1.389 sum 15.151 12.749 4.153 20.232 Atomic orbital electron populations 1.21026 0.89307 1.04511 1.03397 1.19644 0.97413 0.90245 1.02110 1.21524 0.94590 0.98174 0.96847 1.21362 0.94403 0.97860 1.02549 1.22174 1.00329 0.80967 1.01655 1.46400 1.05466 1.06416 1.46684 1.77667 1.22366 0.84057 1.33692 1.23988 0.89169 1.01142 0.96315 1.20307 0.97205 0.90556 1.18885 1.19695 0.88824 0.99814 0.97131 1.19492 0.93696 0.95689 0.94636 1.21470 0.98109 1.42819 0.93691 0.94218 1.25843 0.95200 0.94737 1.02769 1.70047 1.12088 1.48706 1.28101 0.85803 0.78694 0.79612 0.79407 1.19647 1.20602 1.17946 1.19583 0.84376 0.96033 1.03348 0.90050 0.91492 0.89129 0.81022 0.78382 0.79244 0.77671 0.92158 0.91833 0.96644 0.97597 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.97 71.24 0.64 -3.00 16 2 C -0.09 -2.65 5.90 -19.74 -0.12 -2.77 16 3 C -0.09 -1.74 9.73 22.31 0.22 -1.53 16 4 C -0.14 -2.23 9.98 22.06 0.22 -2.01 16 5 C 0.07 1.56 11.19 83.20 0.93 2.50 16 6 N -0.28 -9.01 3.90 -187.78 -0.73 -9.75 16 7 N -0.35 -12.34 12.66 -57.54 -0.73 -13.07 16 8 C 0.07 2.39 11.87 84.82 1.01 3.39 16 9 C -0.26 -9.81 5.44 -19.63 -0.11 -9.92 16 10 C -0.02 -0.67 4.74 29.85 0.14 -0.53 16 11 C 0.00 0.11 3.50 29.85 0.10 0.22 16 12 C -0.52 -30.30 9.66 25.60 0.25 -30.06 16 13 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 14 C 0.01 0.67 5.47 84.65 0.46 1.14 16 15 N -0.95 -59.63 13.96 21.44 0.30 -59.33 16 16 Si 0.94 45.60 27.47 68.60 1.88 47.48 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 20 C 0.09 2.98 6.67 39.11 0.26 3.24 16 21 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.07 2.47 3.81 -2.39 -0.01 2.46 16 23 H 0.09 2.12 8.09 -2.38 -0.02 2.11 16 24 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 25 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 26 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 27 H 0.21 5.98 8.06 -2.91 -0.02 5.95 16 28 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.06 2.59 6.29 -2.39 -0.02 2.58 16 30 H 0.02 0.75 5.77 -2.39 -0.01 0.74 16 31 H 0.01 0.28 7.57 -2.39 -0.02 0.26 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -73.51 268.19 5.79 -67.72 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.06 Total: 6.27 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 4.01 Total: -39.32 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -1.16 Total: -82.15 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -73.51 5.79 -67.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.070 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds