Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33399 * 126.27063 * 2 1 4 4 C 1.30899 * 109.87057 * 179.97438 * 3 2 1 5 5 N 1.35036 * 109.37209 * 0.02562 * 4 3 2 6 6 C 1.37060 * 133.11826 * 180.29581 * 5 4 3 7 7 C 1.34673 * 120.55607 * 180.22011 * 6 5 4 8 8 C 1.50701 * 119.69139 * 179.72346 * 7 6 5 9 9 H 1.09005 * 109.46995 * 359.73375 * 8 7 6 10 10 C 1.52999 * 109.47433 * 239.73239 * 8 7 6 11 11 C 1.50694 * 109.47169 * 119.72845 * 8 7 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.40810 * 120.61964 * 359.45140 * 7 6 5 20 20 C 1.35885 * 119.76860 * 0.27229 * 19 7 6 21 21 C 1.37990 * 126.26530 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47071 * 270.02603 * 1 2 3 23 23 H 1.09001 * 109.46867 * 30.02383 * 1 2 3 24 24 H 1.08998 * 109.47067 * 150.01972 * 1 2 3 25 25 H 1.07996 * 125.31416 * 180.02562 * 4 3 2 26 26 H 1.08003 * 119.72814 * 359.96454 * 6 5 4 27 27 H 1.09002 * 109.46412 * 300.00110 * 10 8 7 28 28 H 1.08993 * 109.47298 * 59.99347 * 10 8 7 29 29 H 1.09001 * 109.47411 * 180.02562 * 10 8 7 30 30 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 31 31 H 1.07994 * 120.11848 * 180.25259 * 19 7 6 32 32 H 1.07998 * 120.40817 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 7 3.6220 -0.6426 0.0004 6 6 4.6697 -1.5263 0.0059 7 6 4.4454 -2.8542 -0.0004 8 6 5.6119 -3.8083 -0.0005 9 1 6.5438 -3.2428 0.0003 10 6 5.5506 -4.6888 -1.2502 11 6 5.5505 -4.6768 1.2295 12 1 4.7474 -4.5503 1.9404 13 6 6.5202 -5.6324 1.4479 14 7 7.4985 -5.7861 0.5825 15 14 6.4446 -6.7085 2.9729 16 1 7.1916 -6.0551 4.0774 17 1 5.0278 -6.8960 3.3765 18 1 7.0540 -8.0300 2.6769 19 6 3.1311 -3.3595 -0.0012 20 6 2.0780 -2.5007 -0.0011 21 6 2.3233 -1.1126 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 4.3997 1.3750 0.0011 26 1 5.6838 -1.1547 0.0112 27 1 4.6187 -5.2542 -1.2508 28 1 5.5949 -4.0607 -2.1398 29 1 6.3941 -5.3792 -1.2500 30 1 8.1809 -6.4581 0.7363 31 1 2.9605 -4.4259 -0.0021 32 1 1.0657 -2.8770 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = 68.764831 kcal Electronic energy + Delta-G solvation = -15407.418787 eV Core-core repulsion = 12947.569883 eV Total energy + Delta-G solvation = -2459.848904 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.30788 -37.57903 -34.26435 -33.33981 -31.47744 -29.96943 -28.49509 -25.93340 -25.27824 -23.17798 -22.51282 -20.29934 -19.88918 -17.27256 -16.23985 -15.90831 -15.44322 -15.21629 -14.54995 -14.07641 -13.68604 -13.01875 -12.83047 -12.62639 -12.09563 -12.00359 -11.74912 -11.33979 -11.21557 -11.01272 -10.75770 -10.44334 -10.28074 -10.03388 -9.93684 -9.71979 -9.22868 -8.52666 -8.37549 -6.91984 -6.15883 -4.24041 1.36027 1.84659 3.13918 3.21624 3.29072 3.32058 3.39627 3.97849 4.32404 4.80493 4.96625 5.15788 5.19975 5.27068 5.46842 5.60252 5.75478 5.85207 5.88740 6.07765 6.32964 6.39049 6.60134 6.66545 6.84491 6.91329 6.96230 7.04882 7.19247 7.53264 7.65924 7.74646 7.92232 8.19169 8.26959 8.78023 9.41954 10.89609 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041763 B = 0.006428 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.282629 B = 4354.963648 C = 4510.909434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.021 4.021 3 N -0.462 5.462 4 C 0.118 3.882 5 N -0.352 5.352 6 C 0.003 3.997 7 C -0.038 4.038 8 C 0.080 3.920 9 H 0.038 0.962 10 C -0.133 4.133 11 C -0.513 4.513 12 H 0.058 0.942 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.273 1.273 18 H -0.285 1.285 19 C -0.085 4.085 20 C -0.103 4.103 21 C 0.008 3.992 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.203 0.797 26 H 0.159 0.841 27 H 0.031 0.969 28 H 0.010 0.990 29 H 0.089 0.911 30 H 0.263 0.737 31 H 0.138 0.862 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 5.784 -1.980 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.157 4.157 3 N -0.177 5.177 4 C -0.157 4.157 5 N -0.021 5.021 6 C -0.115 4.115 7 C -0.040 4.040 8 C 0.061 3.939 9 H 0.056 0.944 10 C -0.191 4.191 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.198 1.198 18 H -0.211 1.211 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.103 4.103 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.220 0.780 26 H 0.176 0.824 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.630 6.610 -2.018 10.295 hybrid contribution 0.576 -1.382 0.892 1.742 sum -7.054 5.229 -1.127 8.852 Atomic orbital electron populations 1.19884 0.87536 1.02153 1.01718 1.20732 0.95866 0.86744 1.12374 1.69763 1.00260 1.30560 1.17089 1.24535 0.96766 0.80462 1.13893 1.42818 1.06874 1.07592 1.44825 1.21541 0.91115 0.89270 1.09588 1.20389 0.97636 0.92573 0.93426 1.17849 0.89188 0.91405 0.95482 0.94405 1.21788 1.02365 1.00098 0.94809 1.21018 1.10619 1.17815 1.05693 0.92337 1.24941 0.95125 0.97062 0.96594 1.69872 1.13068 1.34435 1.35190 0.86540 0.78385 0.79802 0.83022 1.20600 1.19801 1.21085 1.21195 0.91448 1.00727 0.97247 1.20439 1.00040 0.89068 1.02705 1.19431 0.84254 0.94984 1.11620 0.91865 0.91523 0.91643 0.78023 0.82369 0.95020 0.97110 0.89261 0.92724 0.84400 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 10.44 36.01 0.38 -0.33 16 2 C -0.02 -0.36 7.21 -82.00 -0.59 -0.95 16 3 N -0.46 -8.23 11.19 -10.19 -0.11 -8.35 16 4 C 0.12 1.95 12.75 -90.05 -1.15 0.80 16 5 N -0.35 -6.34 2.94 -62.44 -0.18 -6.52 16 6 C 0.00 0.06 10.58 -16.48 -0.17 -0.11 16 7 C -0.04 -0.75 4.69 -104.91 -0.49 -1.25 16 8 C 0.08 1.83 2.46 -92.93 -0.23 1.60 16 9 H 0.04 0.92 7.80 -51.93 -0.41 0.52 16 10 C -0.13 -2.95 8.79 37.16 0.33 -2.63 16 11 C -0.51 -13.05 8.24 -34.44 -0.28 -13.34 16 12 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -23.79 11.32 55.43 0.63 -23.17 16 15 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 19 C -0.08 -1.56 8.73 -39.45 -0.34 -1.91 16 20 C -0.10 -1.71 10.10 -39.39 -0.40 -2.11 16 21 C 0.01 0.14 6.74 -84.09 -0.57 -0.42 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.20 2.55 8.06 -52.49 -0.42 2.13 16 26 H 0.16 2.58 7.86 -52.48 -0.41 2.17 16 27 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.14 2.46 7.60 -52.49 -0.40 2.06 16 32 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -28.55 273.67 -8.17 -36.73 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.99 Total: 0.98 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.62 Total: -19.04 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.33 Total: -38.04 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.55 -8.17 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.491 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds