Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33399 * 126.27063 * 2 1 4 4 C 1.30899 * 109.87057 * 179.97438 * 3 2 1 5 5 N 1.35036 * 109.37209 * 0.02562 * 4 3 2 6 6 C 1.37060 * 133.11826 * 180.29581 * 5 4 3 7 7 C 1.34673 * 120.55607 * 180.22011 * 6 5 4 8 8 C 1.50701 * 119.69139 * 179.72346 * 7 6 5 9 9 H 1.09005 * 109.46995 * 359.73375 * 8 7 6 10 10 C 1.52999 * 109.47433 * 239.73239 * 8 7 6 11 11 C 1.50694 * 109.47169 * 119.72845 * 8 7 6 12 12 H 1.08002 * 120.00179 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00472 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 8 16 16 H 1.48493 * 109.47326 * 270.00340 * 15 13 11 17 17 H 1.48506 * 109.46545 * 30.00090 * 15 13 11 18 18 H 1.48498 * 109.47210 * 149.99801 * 15 13 11 19 19 C 1.40810 * 120.61964 * 359.45140 * 7 6 5 20 20 C 1.35885 * 119.76860 * 0.27229 * 19 7 6 21 21 C 1.37990 * 126.26530 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47071 * 270.02603 * 1 2 3 23 23 H 1.09001 * 109.46867 * 30.02383 * 1 2 3 24 24 H 1.08998 * 109.47067 * 150.01972 * 1 2 3 25 25 H 1.07996 * 125.31416 * 180.02562 * 4 3 2 26 26 H 1.08003 * 119.72814 * 359.96454 * 6 5 4 27 27 H 1.09002 * 109.46412 * 300.00110 * 10 8 7 28 28 H 1.08993 * 109.47298 * 59.99347 * 10 8 7 29 29 H 1.09001 * 109.47411 * 180.02562 * 10 8 7 30 30 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 31 31 H 1.07994 * 120.11848 * 180.25259 * 19 7 6 32 32 H 1.07998 * 120.40817 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2963 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 7 3.6220 -0.6426 0.0004 6 6 4.6697 -1.5263 0.0059 7 6 4.4454 -2.8542 -0.0004 8 6 5.6119 -3.8083 -0.0005 9 1 6.5438 -3.2428 0.0003 10 6 5.5506 -4.6888 -1.2502 11 6 5.5505 -4.6768 1.2295 12 1 4.7474 -4.5503 1.9404 13 6 6.5202 -5.6324 1.4479 14 7 7.4985 -5.7861 0.5825 15 14 6.4446 -6.7085 2.9729 16 1 7.1916 -6.0551 4.0774 17 1 5.0278 -6.8960 3.3765 18 1 7.0540 -8.0300 2.6769 19 6 3.1311 -3.3595 -0.0012 20 6 2.0780 -2.5007 -0.0011 21 6 2.3233 -1.1126 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 4.3997 1.3750 0.0011 26 1 5.6838 -1.1547 0.0112 27 1 4.6187 -5.2542 -1.2508 28 1 5.5949 -4.0607 -2.1398 29 1 6.3941 -5.3792 -1.2500 30 1 8.1809 -6.4581 0.7363 31 1 2.9605 -4.4259 -0.0021 32 1 1.0657 -2.8770 -0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = 55.824895 kcal Electronic energy + Delta-G solvation = -15407.979905 eV Core-core repulsion = 12947.569883 eV Total energy + Delta-G solvation = -2460.410022 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.62962 -39.03484 -35.96543 -34.66979 -33.22575 -31.16427 -30.05676 -27.24502 -27.14461 -24.64487 -23.93767 -21.73845 -21.35917 -18.81251 -17.82359 -17.46074 -16.87179 -16.76547 -16.12095 -15.36078 -15.12966 -14.67136 -14.02134 -13.89378 -13.66798 -13.42393 -13.05656 -13.01300 -12.85692 -12.59389 -12.40118 -12.15890 -12.05156 -11.56281 -11.34763 -11.17536 -11.06141 -10.48958 -9.86425 -8.25446 -8.10640 -6.25936 0.00877 0.46464 1.41765 1.44476 1.52989 1.81626 2.10039 2.41251 2.61953 3.16760 3.63949 3.65397 3.93039 3.98871 4.17701 4.24541 4.51689 4.74966 4.77347 4.90769 4.92777 5.07394 5.10704 5.18518 5.19997 5.31614 5.41841 5.59604 5.69543 5.83521 5.90989 6.03172 6.29617 6.35918 6.81504 6.96275 7.42565 8.92132 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041763 B = 0.006428 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.282629 B = 4354.963648 C = 4510.909434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.019 4.019 3 N -0.485 5.485 4 C 0.123 3.877 5 N -0.362 5.362 6 C 0.004 3.996 7 C -0.055 4.055 8 C 0.082 3.918 9 H 0.015 0.985 10 C -0.123 4.123 11 C -0.522 4.522 12 H 0.052 0.948 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 0.951 3.049 16 H -0.280 1.280 17 H -0.269 1.269 18 H -0.283 1.283 19 C -0.110 4.110 20 C -0.082 4.082 21 C -0.024 4.024 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.235 0.765 26 H 0.172 0.828 27 H 0.036 0.964 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 6.474 -1.655 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.154 4.154 3 N -0.200 5.200 4 C -0.151 4.151 5 N -0.032 5.032 6 C -0.114 4.114 7 C -0.058 4.058 8 C 0.063 3.937 9 H 0.033 0.967 10 C -0.181 4.181 11 C -0.560 4.560 12 H 0.071 0.929 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.777 3.223 16 H -0.206 1.206 17 H -0.193 1.193 18 H -0.208 1.208 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.133 4.133 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.252 0.748 26 H 0.189 0.811 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.225 7.296 -1.694 11.883 hybrid contribution 1.009 -1.443 0.771 1.922 sum -8.217 5.853 -0.922 10.130 Atomic orbital electron populations 1.20059 0.84771 1.03601 1.02972 1.21473 0.97675 0.86131 1.10170 1.69848 1.00902 1.31064 1.18229 1.25320 0.97606 0.80409 1.11798 1.42935 1.06888 1.08007 1.45373 1.21579 0.91905 0.89037 1.08891 1.20113 0.97351 0.92741 0.95588 1.17664 0.89594 0.91597 0.94873 0.96715 1.21626 1.01364 0.99734 0.95347 1.21283 1.10200 1.18097 1.06443 0.92941 1.25625 0.94998 0.98322 0.99007 1.69989 1.13646 1.35057 1.36577 0.85659 0.78407 0.78263 0.79973 1.20553 1.19307 1.20835 1.21152 0.91303 1.01009 0.99625 1.20757 1.01126 0.88334 0.99918 1.19855 0.84513 0.95839 1.13136 0.90579 0.90745 0.89596 0.74843 0.81131 0.94477 0.95601 0.91907 0.92806 0.84532 0.81084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.25 10.44 71.24 0.74 -0.51 16 2 C -0.02 -0.58 7.21 42.26 0.30 -0.28 16 3 N -0.48 -16.20 11.19 -186.14 -2.08 -18.28 16 4 C 0.12 3.81 12.75 180.15 2.30 6.11 16 5 N -0.36 -12.48 2.94 -351.45 -1.03 -13.52 16 6 C 0.00 0.16 10.58 83.06 0.88 1.03 16 7 C -0.06 -2.20 4.69 -20.05 -0.09 -2.30 16 8 C 0.08 3.82 2.46 -12.29 -0.03 3.79 16 9 H 0.01 0.74 7.80 -2.38 -0.02 0.72 16 10 C -0.12 -5.54 8.79 71.98 0.63 -4.90 16 11 C -0.52 -26.84 8.24 25.60 0.21 -26.63 16 12 H 0.05 2.70 7.60 -2.91 -0.02 2.68 16 13 C 0.02 1.03 5.30 84.66 0.45 1.48 16 14 N -0.91 -49.80 11.32 21.45 0.24 -49.55 16 15 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 C -0.11 -3.95 8.73 22.35 0.20 -3.76 16 20 C -0.08 -2.55 10.10 22.39 0.23 -2.32 16 21 C -0.02 -0.80 6.74 38.76 0.26 -0.54 16 22 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.24 5.29 8.06 -2.91 -0.02 5.26 16 26 H 0.17 5.51 7.86 -2.91 -0.02 5.49 16 27 H 0.04 1.57 7.39 -2.39 -0.02 1.55 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 30 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 31 H 0.14 4.82 7.60 -2.91 -0.02 4.80 16 32 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -60.44 273.67 6.33 -54.11 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.11 Total: 12.39 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 6.07 Total: -28.81 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.88 Total: -81.35 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -60.44 6.33 -54.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.932 kcal (2) G-P(sol) polarization free energy of solvation -60.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds