Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30900 * 125.31617 * 2 1 4 4 C 1.33400 * 109.87444 * 179.82588 * 3 2 1 5 5 C 1.38000 * 107.45458 * 0.43552 * 4 3 2 6 6 C 1.40974 * 133.70558 * 179.72348 * 5 4 3 7 7 C 1.50699 * 120.41357 * 0.04021 * 6 5 4 8 8 C 1.52997 * 109.47135 * 84.97721 * 7 6 5 9 9 C 1.50702 * 109.46773 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00330 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99808 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99780 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00125 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46858 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46652 * 120.00283 * 13 11 9 16 16 H 1.48495 * 109.47305 * 240.00330 * 13 11 9 17 17 C 1.35873 * 119.17398 * 180.02562 * 6 5 4 18 18 C 1.40814 * 119.77142 * 359.97438 * 17 6 5 19 19 C 1.34664 * 120.62187 * 359.97438 * 18 17 6 20 20 N 1.35036 * 125.31502 * 180.30735 * 2 1 3 21 21 H 1.09002 * 109.47152 * 269.69372 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.69472 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.69453 * 1 2 3 24 24 H 1.07995 * 126.27458 * 180.15173 * 4 3 2 25 25 H 1.09005 * 109.47026 * 204.98469 * 7 6 5 26 26 H 1.08998 * 109.47031 * 324.97923 * 7 6 5 27 27 H 1.08999 * 109.47436 * 300.00005 * 8 7 6 28 28 H 1.09003 * 109.47137 * 60.00640 * 8 7 6 29 29 H 0.96998 * 119.99782 * 179.97438 * 12 11 9 30 30 H 1.08006 * 120.11645 * 180.02562 * 17 6 5 31 31 H 1.08010 * 119.68794 * 180.02562 * 18 17 6 32 32 H 1.08005 * 119.72353 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0681 0.0000 4 6 3.5496 0.7129 0.0038 5 6 3.5981 -0.6662 -0.0037 6 6 4.6508 -1.6038 -0.0091 7 6 6.0849 -1.1408 -0.0061 8 6 6.5312 -0.8724 1.4325 9 6 7.9655 -0.4100 1.4354 10 1 8.5046 -0.3164 0.5044 11 6 8.5895 -0.1063 2.6269 12 7 7.9331 -0.2207 3.7607 13 14 10.3676 0.4663 2.6306 14 1 10.8763 0.5103 1.2362 15 1 10.4496 1.8224 3.2301 16 1 11.1901 -0.4782 3.4285 17 6 4.3563 -2.9302 -0.0167 18 6 3.0115 -3.3479 -0.0185 19 6 2.0127 -2.4447 -0.0122 20 7 2.2876 -1.1019 -0.0059 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3633 -0.8872 -0.5186 23 1 -0.3633 0.8927 -0.5091 24 1 4.3973 1.3820 0.0070 25 1 6.7169 -1.9130 -0.4447 26 1 6.1721 -0.2248 -0.5904 27 1 5.8991 -0.1002 1.8710 28 1 6.4440 -1.7884 2.0169 29 1 8.3721 -0.0075 4.5989 30 1 5.1509 -3.6618 -0.0204 31 1 2.7790 -4.4027 -0.0241 32 1 0.9864 -2.7812 -0.0141 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = 65.869929 kcal Electronic energy + Delta-G solvation = -15245.147627 eV Core-core repulsion = 12785.173190 eV Total energy + Delta-G solvation = -2459.974437 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.48829 -37.37992 -34.84143 -32.87190 -31.21266 -31.11320 -28.87203 -26.23904 -25.26686 -22.88750 -22.02526 -21.21723 -19.61438 -17.07467 -16.56169 -16.25175 -15.72778 -15.25787 -14.48625 -14.14067 -13.56900 -13.20361 -13.09993 -12.74534 -12.41421 -12.38414 -11.80509 -11.62684 -11.46580 -11.15085 -10.94626 -10.57663 -10.17161 -10.00342 -9.85391 -9.42817 -9.12023 -8.80550 -8.36540 -7.02111 -6.00765 -4.04292 1.14886 1.56553 2.87372 3.31406 3.31666 3.39046 3.42779 3.78314 4.45424 4.58019 4.64674 4.88747 5.15045 5.19639 5.32220 5.35199 5.46739 5.53006 5.68439 5.89413 5.94175 6.16263 6.23232 6.38438 6.55431 6.75387 6.83895 6.96070 7.06968 7.49304 7.65421 7.76704 7.98033 8.20632 8.37288 9.02651 9.60112 11.10290 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.006133 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.594122 B = 4564.209583 C = 4966.716357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.144 3.856 3 N -0.456 5.456 4 C -0.005 4.005 5 C 0.007 3.993 6 C 0.002 3.998 7 C -0.075 4.075 8 C 0.031 3.969 9 C -0.522 4.522 10 H 0.058 0.942 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.159 4.159 18 C -0.112 4.112 19 C 0.012 3.988 20 N -0.360 5.360 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.183 0.817 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -5.207 -7.996 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.111 4.111 3 N -0.171 5.171 4 C -0.160 4.160 5 C -0.102 4.102 6 C 0.000 4.000 7 C -0.113 4.113 8 C -0.006 4.006 9 C -0.560 4.560 10 H 0.076 0.924 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.179 4.179 18 C -0.133 4.133 19 C -0.107 4.107 20 N -0.031 5.031 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.200 0.800 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.227 -4.378 -7.813 15.974 hybrid contribution 1.287 -0.643 0.274 1.465 sum -11.940 -5.020 -7.539 14.987 Atomic orbital electron populations 1.20052 0.84952 1.03476 1.03069 1.23040 0.95406 0.79880 1.12727 1.69920 1.02744 1.27584 1.16887 1.22622 0.94202 0.90930 1.08271 1.19610 0.83412 0.95508 1.11622 1.19820 0.95686 0.91564 0.92975 1.20839 0.87393 1.00746 1.02356 1.19076 0.96047 0.97301 0.88198 1.21248 0.97014 1.44920 0.92822 0.92404 1.25022 0.98088 0.95608 0.95635 1.69985 1.36721 1.48899 0.97648 0.86531 0.84955 0.78389 0.78110 1.19661 1.20971 1.21044 1.20894 0.96030 0.95611 1.05375 1.20772 0.92456 0.99344 1.00701 1.21343 1.00655 0.80608 1.08129 1.42651 1.08085 1.05944 1.46434 0.90631 0.91385 0.89374 0.79981 0.91388 0.91471 0.96122 0.96453 0.93003 0.84818 0.84059 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.33 36.01 0.37 -0.24 16 2 C 0.14 2.31 7.96 -155.09 -1.23 1.08 16 3 N -0.46 -8.56 11.19 -10.11 -0.11 -8.68 16 4 C -0.01 -0.10 11.74 -16.96 -0.20 -0.30 16 5 C 0.01 0.13 6.64 -84.09 -0.56 -0.43 16 6 C 0.00 0.03 5.15 -104.44 -0.54 -0.51 16 7 C -0.08 -1.54 5.20 -27.89 -0.14 -1.69 16 8 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 9 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 13 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.16 -2.51 9.70 -39.46 -0.38 -2.90 16 18 C -0.11 -1.44 9.97 -39.87 -0.40 -1.84 16 19 C 0.01 0.16 10.80 -16.48 -0.18 -0.02 16 20 N -0.36 -5.95 2.94 -58.16 -0.17 -6.12 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.18 3.37 8.06 -52.49 -0.42 2.95 16 25 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 26 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.16 1.40 7.98 -52.48 -0.42 0.98 16 LS Contribution 280.20 15.07 4.22 4.22 Total: -1.00 -32.87 280.20 -8.33 -41.20 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.17 Total: -1.42 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.81 Total: -19.48 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.45 Total: -41.03 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.87 -8.33 -41.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.065 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds