Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31482 * 125.49157 * 2 1 4 4 N 1.40042 * 108.91236 * 179.97438 * 3 2 1 5 5 C 1.36542 * 132.43174 * 179.97438 * 4 3 2 6 6 C 1.34936 * 120.65694 * 180.02562 * 5 4 3 7 7 C 1.40473 * 120.43367 * 0.02582 * 6 5 4 8 8 C 1.36067 * 119.58854 * 359.97438 * 7 6 5 9 9 C 1.37126 * 107.44517 * 0.02562 * 4 3 2 10 10 C 1.38537 * 125.49836 * 179.69642 * 2 1 3 11 11 C 1.50705 * 126.21957 * 359.97438 * 10 2 1 12 12 H 1.08996 * 109.47123 * 180.02562 * 11 10 2 13 13 C 1.52998 * 109.46782 * 60.02205 * 11 10 2 14 14 C 1.50702 * 109.46814 * 300.02577 * 11 10 2 15 15 H 1.07998 * 120.00078 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00033 * 179.97438 * 14 11 10 17 17 N 1.31517 * 119.99743 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00219 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46846 * 60.00344 * 18 16 14 20 20 H 1.48497 * 109.47393 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47390 * 300.00532 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02329 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02016 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02456 * 1 2 3 25 25 H 1.07999 * 119.67097 * 359.97438 * 5 4 3 26 26 H 1.07998 * 119.78025 * 179.97438 * 6 5 4 27 27 H 1.07998 * 120.20544 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.38694 * 179.97438 * 8 7 6 29 29 H 1.08996 * 109.47379 * 299.99949 * 13 11 10 30 30 H 1.08997 * 109.47244 * 60.00851 * 13 11 10 31 31 H 1.09011 * 109.47043 * 180.02562 * 13 11 10 32 32 H 0.96998 * 119.99627 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2704 1.0705 0.0000 4 7 3.6126 0.6709 0.0006 5 6 4.7832 1.3740 0.0004 6 6 5.9706 0.7331 0.0006 7 6 6.0216 -0.6707 0.0005 8 6 4.8635 -1.3850 0.0007 9 6 3.6334 -0.7002 0.0004 10 6 2.3115 -1.1279 0.0060 11 6 1.8388 -2.5588 0.0141 12 1 2.7005 -3.2261 0.0180 13 6 0.9940 -2.8238 -1.2337 14 6 1.0066 -2.8058 1.2460 15 1 0.8373 -2.0068 1.9525 16 6 0.4612 -4.0520 1.4710 17 7 0.6678 -5.0252 0.6109 18 14 -0.5697 -4.3585 2.9983 19 1 -1.7435 -3.4487 2.9939 20 1 -1.0357 -5.7684 3.0063 21 1 0.2508 -4.1019 4.2092 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8902 0.5134 25 1 4.7583 2.4537 -0.0008 26 1 6.8878 1.3033 0.0000 27 1 6.9741 -1.1798 0.0011 28 1 4.8877 -2.4648 0.0002 29 1 0.1322 -2.1565 -1.2375 30 1 1.5959 -2.6452 -2.1246 31 1 0.6516 -3.8587 -1.2276 32 1 0.2844 -5.9020 0.7694 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = 74.756165 kcal Electronic energy + Delta-G solvation = -15762.608553 eV Core-core repulsion = 13303.019452 eV Total energy + Delta-G solvation = -2459.589100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.81269 -38.39857 -36.30266 -33.96689 -32.49859 -32.13513 -29.14943 -28.19673 -27.12659 -24.27488 -23.73875 -22.05899 -20.64490 -18.52964 -17.58820 -17.35687 -16.62584 -16.46032 -16.35167 -15.38258 -14.76547 -14.58470 -14.15095 -13.75164 -13.45459 -13.22710 -12.98934 -12.84753 -12.73500 -12.55213 -12.30366 -12.21727 -11.98853 -11.73645 -11.32375 -11.10549 -10.73874 -10.36503 -9.97849 -8.23210 -7.95821 -6.14055 0.00649 0.27979 1.44689 1.45090 1.51955 1.53366 1.87473 2.47381 2.62600 3.23700 3.42520 3.83924 4.01043 4.17410 4.28979 4.51522 4.56980 4.76183 4.82485 4.85190 4.99167 5.06715 5.15475 5.19819 5.33510 5.39009 5.44708 5.65444 5.67333 5.85119 6.00693 6.17353 6.17898 6.45144 6.79849 6.92215 7.52149 9.02022 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031428 B = 0.008305 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.702876 B = 3370.531461 C = 3682.204134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.094 3.906 3 N -0.360 5.360 4 N -0.287 5.287 5 C 0.081 3.919 6 C -0.152 4.152 7 C -0.079 4.079 8 C -0.132 4.132 9 C 0.065 3.935 10 C -0.228 4.228 11 C 0.122 3.878 12 H -0.001 1.001 13 C -0.122 4.122 14 C -0.508 4.508 15 H 0.045 0.955 16 C 0.018 3.982 17 N -0.916 5.916 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.279 1.279 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.189 0.811 26 H 0.200 0.800 27 H 0.175 0.825 28 H 0.136 0.864 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.060 0.940 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.250 9.786 -1.686 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.060 4.060 3 N -0.187 5.187 4 N -0.055 5.055 5 C -0.043 4.043 6 C -0.174 4.174 7 C -0.102 4.102 8 C -0.152 4.152 9 C -0.053 4.053 10 C -0.239 4.239 11 C 0.103 3.897 12 H 0.017 0.983 13 C -0.180 4.180 14 C -0.546 4.546 15 H 0.063 0.937 16 C -0.181 4.181 17 N -0.556 5.556 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.204 1.204 22 H 0.102 0.898 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.206 0.794 26 H 0.217 0.783 27 H 0.193 0.807 28 H 0.154 0.846 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.064 10.927 -1.716 14.300 hybrid contribution -0.719 -1.396 0.746 1.739 sum 8.345 9.530 -0.970 12.705 Atomic orbital electron populations 1.20358 0.85460 1.03796 1.03334 1.22307 0.97968 0.89765 0.95968 1.77516 0.83973 1.21862 1.35337 1.46275 1.06094 1.05508 1.47616 1.22189 0.81453 0.99834 1.00794 1.21340 0.97370 0.94847 1.03795 1.21558 0.98527 0.94412 0.95663 1.20816 0.89738 1.01029 1.03595 1.19789 0.96535 0.84554 1.04413 1.20633 0.89936 0.98063 1.15261 1.16871 0.93658 0.85239 0.93979 0.98309 1.21667 0.98694 1.02133 0.95495 1.21248 1.31222 0.95788 1.06380 0.93723 1.25625 0.97573 0.95927 0.98959 1.70000 1.46177 1.02579 1.36874 0.85788 0.79450 0.77173 0.80316 1.19343 1.20841 1.20442 0.89801 0.89751 0.90361 0.79403 0.78339 0.80731 0.84638 0.94199 0.96928 0.92099 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.76 8.79 71.24 0.63 -2.14 16 2 C 0.09 4.21 6.97 42.68 0.30 4.51 16 3 N -0.36 -15.30 12.66 -47.88 -0.61 -15.90 16 4 N -0.29 -10.99 3.90 -187.78 -0.73 -11.72 16 5 C 0.08 2.13 11.19 83.20 0.93 3.06 16 6 C -0.15 -2.97 9.98 22.06 0.22 -2.75 16 7 C -0.08 -1.83 10.07 22.31 0.22 -1.60 16 8 C -0.13 -4.52 9.94 22.39 0.22 -4.30 16 9 C 0.07 2.75 6.76 39.11 0.26 3.01 16 10 C -0.23 -10.95 4.83 -19.63 -0.09 -11.04 16 11 C 0.12 6.44 2.52 -12.28 -0.03 6.41 16 12 H 0.00 -0.07 7.67 -2.39 -0.02 -0.09 16 13 C -0.12 -6.15 8.83 71.98 0.64 -5.52 16 14 C -0.51 -28.34 6.88 25.60 0.18 -28.17 16 15 H 0.04 2.52 7.41 -2.91 -0.02 2.50 16 16 C 0.02 0.97 5.30 84.65 0.45 1.42 16 17 N -0.92 -52.73 11.32 21.45 0.24 -52.48 16 18 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H 0.08 2.94 7.90 -2.39 -0.02 2.92 16 23 H 0.08 3.63 5.83 -2.39 -0.01 3.62 16 24 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 26 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 28 H 0.14 4.72 7.76 -2.91 -0.02 4.70 16 29 H 0.04 1.88 6.09 -2.39 -0.01 1.86 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -69.47 268.30 5.97 -63.50 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.12 Total: 7.84 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.92 Total: -37.10 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.10 Total: -80.11 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.47 5.97 -63.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.253 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds