Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31494 * 125.49315 * 2 1 4 4 N 1.40041 * 108.90900 * 180.25143 * 3 2 1 5 5 C 1.36540 * 132.43323 * 179.75964 * 4 3 2 6 6 C 1.34929 * 120.66465 * 180.02562 * 5 4 3 7 7 C 1.40474 * 120.42821 * 359.97438 * 6 5 4 8 8 C 1.36067 * 119.59253 * 0.02562 * 7 6 5 9 9 C 1.37130 * 107.44765 * 359.75924 * 4 3 2 10 10 C 1.38548 * 125.49840 * 179.84553 * 2 1 3 11 11 C 1.50701 * 126.21339 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.46606 * 179.68707 * 11 10 2 13 13 C 1.52990 * 109.46999 * 299.68987 * 11 10 2 14 14 C 1.50701 * 109.47036 * 59.69345 * 11 10 2 15 15 H 1.07996 * 119.99638 * 266.36406 * 14 11 10 16 16 C 1.37871 * 120.00139 * 86.35793 * 14 11 10 17 17 N 1.31518 * 120.00322 * 353.79443 * 16 14 11 18 18 Si 1.86800 * 120.00058 * 173.78742 * 16 14 11 19 19 H 1.48495 * 109.47510 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47071 * 300.00469 * 18 16 14 21 21 H 1.48507 * 109.46989 * 60.00440 * 18 16 14 22 22 H 1.08996 * 109.47017 * 270.15667 * 1 2 3 23 23 H 1.08998 * 109.47214 * 30.15672 * 1 2 3 24 24 H 1.08995 * 109.47054 * 150.15712 * 1 2 3 25 25 H 1.08003 * 119.66498 * 359.97437 * 5 4 3 26 26 H 1.07997 * 119.78821 * 180.02562 * 6 5 4 27 27 H 1.08004 * 120.20391 * 180.02562 * 7 6 5 28 28 H 1.08001 * 120.38706 * 179.97438 * 8 7 6 29 29 H 1.09006 * 109.46820 * 185.45618 * 13 11 10 30 30 H 1.08998 * 109.47431 * 305.45833 * 13 11 10 31 31 H 1.09004 * 109.47341 * 65.46164 * 13 11 10 32 32 H 0.96997 * 119.99388 * 354.50445 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0706 0.0000 4 7 3.6126 0.6709 -0.0058 5 6 4.7832 1.3738 -0.0124 6 6 5.9706 0.7330 -0.0177 7 6 6.0215 -0.6708 -0.0159 8 6 4.8634 -1.3851 -0.0093 9 6 3.6333 -0.7002 -0.0039 10 6 2.3115 -1.1280 0.0030 11 6 1.8386 -2.5589 0.0064 12 1 2.7004 -3.2262 0.0027 13 6 0.9998 -2.8158 1.2597 14 6 1.0007 -2.8138 -1.2200 15 1 -0.0729 -2.7073 -1.1720 16 6 1.6047 -3.1828 -2.4031 17 7 2.9165 -3.1942 -2.4963 18 14 0.5598 -3.6670 -3.8739 19 1 1.4432 -4.0191 -5.0144 20 1 -0.2810 -4.8386 -3.5196 21 1 -0.3136 -2.5286 -4.2569 22 1 -0.3633 0.0028 1.0276 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5114 25 1 4.7583 2.4535 -0.0143 26 1 6.8879 1.3031 -0.0225 27 1 6.9740 -1.1800 -0.0196 28 1 4.8876 -2.4649 -0.0082 29 1 0.7390 -3.8729 1.3119 30 1 1.5737 -2.5390 2.1441 31 1 0.0889 -2.2186 1.2161 32 1 3.4577 -2.8674 -1.7606 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261214610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = 86.845497 kcal Electronic energy + Delta-G solvation = -16035.869384 eV Core-core repulsion = 13576.804517 eV Total energy + Delta-G solvation = -2459.064868 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25304 -36.93601 -34.69757 -32.07653 -31.04384 -30.59689 -27.67310 -26.77622 -24.50660 -22.90028 -22.10939 -20.58876 -19.12061 -17.08607 -16.05764 -15.91242 -15.23093 -14.87952 -14.11202 -13.75684 -13.39514 -13.00755 -12.68165 -12.25164 -11.99236 -11.74846 -11.56971 -11.21483 -10.86856 -10.82689 -10.80729 -10.46590 -10.15012 -10.02945 -9.66040 -9.36790 -8.52374 -8.45777 -8.35609 -6.56619 -6.28878 -4.01900 1.38852 1.76466 2.97521 3.44352 3.46085 3.51741 3.64736 4.07939 4.56718 4.81834 5.19548 5.29603 5.40661 5.44445 5.66604 5.89097 6.03223 6.14880 6.24476 6.32367 6.43984 6.46810 6.55892 6.64583 6.69220 6.85177 6.93714 7.06816 7.25863 7.51180 7.62908 7.66756 8.22853 8.41079 8.48243 8.91938 9.69798 11.08260 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025017 B = 0.010454 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.992368 B = 2677.883503 C = 3097.907928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.104 3.896 3 N -0.337 5.337 4 N -0.286 5.286 5 C 0.102 3.898 6 C -0.175 4.175 7 C -0.121 4.121 8 C -0.076 4.076 9 C 0.068 3.932 10 C -0.166 4.166 11 C 0.091 3.909 12 H 0.035 0.965 13 C -0.127 4.127 14 C -0.582 4.582 15 H 0.053 0.947 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.289 1.289 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.154 0.846 26 H 0.142 0.858 27 H 0.130 0.870 28 H 0.139 0.861 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 5.123 5.390 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 N -0.164 5.164 4 N -0.055 5.055 5 C -0.023 4.023 6 C -0.198 4.198 7 C -0.144 4.144 8 C -0.096 4.096 9 C -0.048 4.048 10 C -0.177 4.177 11 C 0.072 3.928 12 H 0.053 0.947 13 C -0.185 4.185 14 C -0.620 4.620 15 H 0.071 0.929 16 C -0.183 4.183 17 N -0.545 5.545 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.215 1.215 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.119 0.881 25 H 0.171 0.829 26 H 0.160 0.840 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.981 5.861 3.832 7.611 hybrid contribution 0.150 -0.032 1.349 1.358 sum 3.131 5.829 5.181 8.404 Atomic orbital electron populations 1.20340 0.86882 1.04013 1.01898 1.21949 0.96785 0.90036 0.96353 1.77572 0.83234 1.22137 1.33446 1.45925 1.05230 1.05662 1.48668 1.21190 0.82362 0.97796 1.00926 1.20561 0.96188 0.95157 1.07849 1.20876 0.98227 0.93600 1.01648 1.20608 0.89515 1.00571 0.98937 1.19430 0.96004 0.83409 1.05963 1.21044 0.88124 0.99087 1.09441 1.17363 0.95496 0.86016 0.93965 0.94729 1.21772 0.99565 1.00042 0.97087 1.21863 0.93904 1.50548 0.95636 0.92873 1.25742 0.97480 0.94541 1.00512 1.70745 1.04834 1.43224 1.35653 0.83677 0.74974 0.76465 0.76000 1.20936 1.21360 1.21528 0.91567 0.92153 0.88108 0.82855 0.84047 0.85254 0.84293 0.93699 0.95760 0.93650 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.40 8.85 36.01 0.32 -1.08 16 2 C 0.10 2.38 6.98 -82.62 -0.58 1.81 16 3 N -0.34 -7.66 12.66 33.52 0.42 -7.23 16 4 N -0.29 -6.13 3.90 -10.71 -0.04 -6.17 16 5 C 0.10 1.72 11.19 -16.63 -0.19 1.53 16 6 C -0.17 -2.54 9.98 -39.91 -0.40 -2.93 16 7 C -0.12 -1.93 10.07 -39.52 -0.40 -2.32 16 8 C -0.08 -1.51 9.17 -39.39 -0.36 -1.87 16 9 C 0.07 1.54 6.49 -84.27 -0.55 0.99 16 10 C -0.17 -4.00 4.60 -104.25 -0.48 -4.47 16 11 C 0.09 2.25 2.15 -92.93 -0.20 2.05 16 12 H 0.03 0.91 6.60 -51.93 -0.34 0.57 16 13 C -0.13 -2.68 8.97 37.15 0.33 -2.34 16 14 C -0.58 -15.58 7.03 -34.44 -0.24 -15.82 16 15 H 0.05 1.39 6.75 -52.49 -0.35 1.03 16 16 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 17 N -0.91 -26.96 13.56 55.43 0.75 -26.21 16 18 Si 1.06 24.94 29.91 -169.99 -5.08 19.85 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.07 1.11 7.99 -51.93 -0.41 0.69 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.10 2.06 5.39 -51.93 -0.28 1.78 16 25 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 26 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 28 H 0.14 2.71 7.53 -52.49 -0.40 2.31 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.90 6.33 -51.93 -0.33 0.57 16 32 H 0.27 7.91 5.36 -40.82 -0.22 7.69 16 LS Contribution 266.82 15.07 4.02 4.02 Total: -1.00 -32.11 266.82 -6.43 -38.54 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.67 Total: 1.14 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.83 Total: -23.94 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 1.13 Total: -39.61 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.11 -6.43 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.382 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds