Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31494 * 125.49315 * 2 1 4 4 N 1.40041 * 108.90900 * 180.25143 * 3 2 1 5 5 C 1.36540 * 132.43323 * 179.75964 * 4 3 2 6 6 C 1.34929 * 120.66465 * 180.02562 * 5 4 3 7 7 C 1.40474 * 120.42821 * 359.97438 * 6 5 4 8 8 C 1.36067 * 119.59253 * 0.02562 * 7 6 5 9 9 C 1.37130 * 107.44765 * 359.75924 * 4 3 2 10 10 C 1.38548 * 125.49840 * 179.84553 * 2 1 3 11 11 C 1.50701 * 126.21339 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.46606 * 179.68707 * 11 10 2 13 13 C 1.52990 * 109.46999 * 299.68987 * 11 10 2 14 14 C 1.50701 * 109.47036 * 59.69345 * 11 10 2 15 15 H 1.07996 * 119.99638 * 266.36406 * 14 11 10 16 16 C 1.37871 * 120.00139 * 86.35793 * 14 11 10 17 17 N 1.31518 * 120.00322 * 353.79443 * 16 14 11 18 18 Si 1.86800 * 120.00058 * 173.78742 * 16 14 11 19 19 H 1.48495 * 109.47510 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47071 * 300.00469 * 18 16 14 21 21 H 1.48507 * 109.46989 * 60.00440 * 18 16 14 22 22 H 1.08996 * 109.47017 * 270.15667 * 1 2 3 23 23 H 1.08998 * 109.47214 * 30.15672 * 1 2 3 24 24 H 1.08995 * 109.47054 * 150.15712 * 1 2 3 25 25 H 1.08003 * 119.66498 * 359.97437 * 5 4 3 26 26 H 1.07997 * 119.78821 * 180.02562 * 6 5 4 27 27 H 1.08004 * 120.20391 * 180.02562 * 7 6 5 28 28 H 1.08001 * 120.38706 * 179.97438 * 8 7 6 29 29 H 1.09006 * 109.46820 * 185.45618 * 13 11 10 30 30 H 1.08998 * 109.47431 * 305.45833 * 13 11 10 31 31 H 1.09004 * 109.47341 * 65.46164 * 13 11 10 32 32 H 0.96997 * 119.99388 * 354.50445 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0706 0.0000 4 7 3.6126 0.6709 -0.0058 5 6 4.7832 1.3738 -0.0124 6 6 5.9706 0.7330 -0.0177 7 6 6.0215 -0.6708 -0.0159 8 6 4.8634 -1.3851 -0.0093 9 6 3.6333 -0.7002 -0.0039 10 6 2.3115 -1.1280 0.0030 11 6 1.8386 -2.5589 0.0064 12 1 2.7004 -3.2262 0.0027 13 6 0.9998 -2.8158 1.2597 14 6 1.0007 -2.8138 -1.2200 15 1 -0.0729 -2.7073 -1.1720 16 6 1.6047 -3.1828 -2.4031 17 7 2.9165 -3.1942 -2.4963 18 14 0.5598 -3.6670 -3.8739 19 1 1.4432 -4.0191 -5.0144 20 1 -0.2810 -4.8386 -3.5196 21 1 -0.3136 -2.5286 -4.2569 22 1 -0.3633 0.0028 1.0276 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5114 25 1 4.7583 2.4535 -0.0143 26 1 6.8879 1.3031 -0.0225 27 1 6.9740 -1.1800 -0.0196 28 1 4.8876 -2.4649 -0.0082 29 1 0.7390 -3.8729 1.3119 30 1 1.5737 -2.5390 2.1441 31 1 0.0889 -2.2186 1.2161 32 1 3.4577 -2.8674 -1.7606 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261214610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = 67.787154 kcal Electronic energy + Delta-G solvation = -16036.695816 eV Core-core repulsion = 13576.804517 eV Total energy + Delta-G solvation = -2459.891299 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.81065 -38.42306 -36.50541 -33.78874 -32.50925 -32.38296 -29.22580 -28.29895 -26.52303 -24.35261 -23.78667 -22.21100 -20.77038 -18.96447 -17.64372 -17.39745 -16.58682 -16.47258 -15.69697 -15.62825 -15.09114 -14.72986 -14.16478 -13.83179 -13.66565 -13.37138 -13.00730 -12.70201 -12.65909 -12.62810 -12.24851 -12.12242 -11.96599 -11.80219 -11.27620 -11.14063 -10.45338 -10.40799 -9.98292 -8.47901 -8.12036 -6.15739 -0.01511 0.27867 1.52037 1.54554 1.62207 1.79523 1.89803 2.57456 2.66329 3.28869 3.45727 3.83587 3.96924 4.15307 4.23479 4.43673 4.51033 4.65552 4.69412 4.77370 4.86677 4.94506 5.01019 5.07783 5.14937 5.30617 5.38020 5.53582 5.59397 5.69693 5.92899 6.16719 6.22444 6.41316 6.76121 6.83781 7.63549 8.95374 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025017 B = 0.010454 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.992368 B = 2677.883503 C = 3097.907928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.090 3.910 3 N -0.362 5.362 4 N -0.291 5.291 5 C 0.079 3.921 6 C -0.154 4.154 7 C -0.087 4.087 8 C -0.126 4.126 9 C 0.061 3.939 10 C -0.216 4.216 11 C 0.093 3.907 12 H 0.003 0.997 13 C -0.119 4.119 14 C -0.581 4.581 15 H 0.055 0.945 16 C -0.031 4.031 17 N -0.945 5.945 18 Si 1.102 2.898 19 H -0.292 1.292 20 H -0.267 1.267 21 H -0.277 1.277 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.189 0.811 26 H 0.199 0.801 27 H 0.171 0.829 28 H 0.126 0.874 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 6.562 5.654 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.065 4.065 3 N -0.190 5.190 4 N -0.059 5.059 5 C -0.045 4.045 6 C -0.175 4.175 7 C -0.110 4.110 8 C -0.146 4.146 9 C -0.057 4.057 10 C -0.227 4.227 11 C 0.073 3.927 12 H 0.021 0.979 13 C -0.177 4.177 14 C -0.619 4.619 15 H 0.073 0.927 16 C -0.230 4.230 17 N -0.583 5.583 18 Si 0.926 3.074 19 H -0.218 1.218 20 H -0.192 1.192 21 H -0.203 1.203 22 H 0.108 0.892 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.206 0.794 26 H 0.216 0.784 27 H 0.189 0.811 28 H 0.144 0.856 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.166 7.312 4.122 9.371 hybrid contribution 0.039 -0.383 1.353 1.407 sum 4.205 6.929 5.475 9.781 Atomic orbital electron populations 1.20351 0.85194 1.03768 1.03340 1.22348 0.98132 0.89762 0.96221 1.77464 0.83971 1.22175 1.35342 1.46252 1.06046 1.05566 1.48027 1.22157 0.81601 0.99777 1.00933 1.21293 0.97452 0.94656 1.04136 1.21508 0.98427 0.94594 0.96442 1.20698 0.90229 1.00448 1.03267 1.19768 0.96624 0.84471 1.04836 1.20907 0.89466 0.98687 1.13629 1.17229 0.94423 0.86444 0.94565 0.97881 1.21673 0.99594 1.00363 0.96031 1.22192 0.94233 1.49124 0.96363 0.92685 1.26984 0.97841 0.94794 1.03370 1.70806 1.05804 1.45748 1.35970 0.83130 0.73958 0.77263 0.73067 1.21806 1.19229 1.20264 0.89250 0.90784 0.89719 0.79420 0.78355 0.81127 0.85649 0.93463 0.94795 0.92529 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.62 8.85 71.24 0.63 -1.99 16 2 C 0.09 4.16 6.98 42.68 0.30 4.45 16 3 N -0.36 -16.43 12.66 -47.88 -0.61 -17.03 16 4 N -0.29 -12.25 3.90 -187.79 -0.73 -12.98 16 5 C 0.08 2.41 11.19 83.20 0.93 3.34 16 6 C -0.15 -3.71 9.98 22.05 0.22 -3.49 16 7 C -0.09 -2.48 10.07 22.31 0.22 -2.26 16 8 C -0.13 -5.01 9.17 22.39 0.21 -4.81 16 9 C 0.06 2.79 6.49 39.11 0.25 3.05 16 10 C -0.22 -10.70 4.60 -19.62 -0.09 -10.79 16 11 C 0.09 4.77 2.15 -12.29 -0.03 4.74 16 12 H 0.00 0.17 6.60 -2.39 -0.02 0.15 16 13 C -0.12 -5.10 8.97 71.98 0.65 -4.46 16 14 C -0.58 -31.93 7.03 25.60 0.18 -31.75 16 15 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 16 C -0.03 -1.79 5.45 84.65 0.46 -1.33 16 17 N -0.95 -58.00 13.56 21.45 0.29 -57.71 16 18 Si 1.10 50.90 29.91 68.60 2.05 52.96 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H 0.09 2.93 7.99 -2.39 -0.02 2.91 16 23 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 24 H 0.08 3.50 5.39 -2.39 -0.01 3.48 16 25 H 0.19 4.27 8.06 -2.91 -0.02 4.24 16 26 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 27 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 28 H 0.13 5.17 7.53 -2.91 -0.02 5.15 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 2.25 6.33 -2.39 -0.02 2.23 16 32 H 0.27 16.23 5.36 -92.71 -0.50 15.73 16 Total: -1.00 -72.90 266.82 6.33 -66.57 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.39 Total: 13.49 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.93 Total: -45.29 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -1.05 Total: -87.73 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.96 kcal Total: -72.90 6.33 -66.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261214610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.355 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds