Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36026 * 120.33838 * 2 1 4 4 C 1.40469 * 119.69578 * 179.90130 * 3 2 1 5 5 C 1.34951 * 120.30179 * 359.56889 * 4 3 2 6 6 N 1.36485 * 120.60870 * 0.02562 * 5 4 3 7 7 C 1.36829 * 132.56910 * 180.02562 * 6 5 4 8 8 C 1.50706 * 126.41156 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.46874 * 264.71397 * 8 7 6 10 10 C 1.50706 * 109.46837 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99985 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99849 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00257 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46917 * 90.00068 * 14 12 10 16 16 H 1.48493 * 109.47371 * 210.00278 * 14 12 10 17 17 H 1.48503 * 109.46910 * 330.00420 * 14 12 10 18 18 C 1.35103 * 107.18205 * 179.71621 * 7 6 5 19 19 N 1.33519 * 108.62383 * 0.26520 * 18 7 6 20 20 C 1.32553 * 109.16086 * 359.97438 * 19 18 7 21 21 H 1.09002 * 109.47240 * 270.76199 * 1 2 3 22 22 H 1.08997 * 109.47423 * 30.76527 * 1 2 3 23 23 H 1.09009 * 109.47181 * 150.76195 * 1 2 3 24 24 H 1.07998 * 120.14988 * 359.47393 * 3 2 1 25 25 H 1.08006 * 119.85134 * 179.59158 * 4 3 2 26 26 H 1.07997 * 119.69449 * 180.02562 * 5 4 3 27 27 H 1.08998 * 109.46765 * 24.70837 * 8 7 6 28 28 H 1.08993 * 109.47094 * 144.71110 * 8 7 6 29 29 H 1.09001 * 109.47417 * 299.99505 * 9 8 7 30 30 H 1.09000 * 109.47298 * 60.00245 * 9 8 7 31 31 H 0.97005 * 119.99722 * 179.97438 * 13 12 10 32 32 H 1.08004 * 125.68800 * 180.26523 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5986 1.1582 0.0021 5 6 4.2664 -0.0144 0.0129 6 7 3.5895 -1.1996 0.0214 7 6 4.0054 -2.5030 0.0332 8 6 5.4328 -2.9865 0.0398 9 6 5.8757 -3.2882 -1.3932 10 6 7.3033 -3.7711 -1.3867 11 1 7.8407 -3.8548 -0.4537 12 6 7.9229 -4.1070 -2.5717 13 7 7.2682 -4.0055 -3.7079 14 14 9.6921 -4.7062 -2.5636 15 1 9.7135 -6.1843 -2.4214 16 1 10.3508 -4.3219 -3.8377 17 1 10.4186 -4.0889 -1.4249 18 6 2.8971 -3.2756 0.0437 19 7 1.8238 -2.4815 0.0327 20 6 2.2187 -1.2163 0.0159 21 1 -0.3634 0.0137 1.0276 22 1 -0.3634 0.8830 -0.5256 23 1 -0.3634 -0.8968 -0.5020 24 1 1.6620 2.1138 -0.0086 25 1 4.1467 2.0889 -0.0046 26 1 5.3463 -0.0151 0.0148 27 1 6.0757 -2.2152 0.4640 28 1 5.5068 -3.8924 0.6414 29 1 5.2329 -4.0595 -1.8175 30 1 5.8018 -2.3822 -1.9948 31 1 7.7043 -4.2415 -4.5416 32 1 2.8819 -4.3554 0.0585 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = 66.225067 kcal Electronic energy + Delta-G solvation = -15180.115517 eV Core-core repulsion = 12720.156480 eV Total energy + Delta-G solvation = -2459.959037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.45293 -37.31150 -34.61209 -33.68041 -31.63086 -30.64188 -28.11245 -26.89933 -25.00600 -22.62939 -22.25914 -21.46631 -19.68397 -17.04962 -16.57350 -16.27565 -15.54685 -15.42665 -14.50400 -14.13063 -13.33818 -13.26266 -13.08056 -12.89476 -12.55651 -12.28747 -11.74542 -11.62206 -11.51759 -11.16035 -10.99477 -10.70805 -10.32452 -10.13262 -9.73870 -9.58058 -9.19173 -8.42299 -8.38079 -7.27518 -6.05614 -4.10128 0.97355 1.59601 2.95038 3.27354 3.28492 3.34965 3.37643 3.77099 4.40484 4.49559 4.71412 4.94987 5.00184 5.20910 5.29888 5.46690 5.62311 5.65172 5.75112 5.83712 5.90325 6.08972 6.20374 6.31917 6.46183 6.57243 6.79429 6.83889 7.08776 7.44176 7.58975 7.69692 7.92422 8.23984 8.31249 8.96747 9.54661 11.05211 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044332 B = 0.005680 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.448057 B = 4928.352022 C = 5192.060511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.047 4.047 3 C -0.119 4.119 4 C -0.153 4.153 5 C 0.065 3.935 6 N -0.360 5.360 7 C -0.026 4.026 8 C -0.040 4.040 9 C 0.030 3.970 10 C -0.526 4.526 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.017 3.983 19 N -0.491 5.491 20 C 0.204 3.796 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.162 0.838 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 9.879 7.847 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.174 4.174 5 C -0.057 4.057 6 N -0.033 5.033 7 C -0.139 4.139 8 C -0.079 4.079 9 C -0.008 4.008 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.132 4.132 19 N -0.211 5.211 20 C -0.039 4.039 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.153 0.847 25 H 0.164 0.836 26 H 0.179 0.821 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.557 9.522 7.661 15.515 hybrid contribution 1.981 -0.076 -0.239 1.997 sum -7.576 9.446 7.422 14.202 Atomic orbital electron populations 1.20604 0.89444 1.03207 1.02493 1.18924 0.96534 0.88586 1.00903 1.20804 0.93737 0.97488 1.02190 1.20660 0.94648 0.96937 1.05158 1.21650 0.99044 0.83408 1.01573 1.42714 1.08513 1.05961 1.46085 1.21984 0.99743 0.80486 1.11651 1.20360 0.85274 0.99845 1.02376 1.19098 0.96091 0.97078 0.88501 1.21197 0.97548 1.44595 0.93037 0.92469 1.25026 0.98121 0.95572 0.95579 1.69980 1.37000 1.48294 0.97859 0.86572 0.84712 0.79166 0.77426 1.20530 1.21209 1.19847 1.22242 0.86751 0.99789 1.04447 1.70613 1.30158 0.98050 1.22284 1.20631 0.80319 0.94441 1.08501 0.90986 0.91326 0.90533 0.84674 0.83647 0.82086 0.92531 0.90319 0.95956 0.96895 0.92879 0.80453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.02 36.00 0.36 -0.77 16 2 C -0.05 -0.68 5.90 -104.40 -0.62 -1.29 16 3 C -0.12 -1.42 9.72 -39.54 -0.38 -1.80 16 4 C -0.15 -1.86 9.98 -39.91 -0.40 -2.25 16 5 C 0.07 0.99 10.82 -16.65 -0.18 0.81 16 6 N -0.36 -6.61 2.94 -58.46 -0.17 -6.78 16 7 C -0.03 -0.50 6.29 -81.47 -0.51 -1.02 16 8 C -0.04 -0.82 5.59 -27.88 -0.16 -0.97 16 9 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 10 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 14 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.02 0.34 11.75 -17.93 -0.21 0.13 16 19 N -0.49 -9.59 11.31 -12.78 -0.14 -9.73 16 20 C 0.20 3.71 7.52 -156.04 -1.17 2.54 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 23 H 0.08 0.96 8.10 -51.92 -0.42 0.54 16 24 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 25 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 26 H 0.16 2.21 7.91 -52.49 -0.42 1.80 16 27 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.18 2.99 8.06 -52.48 -0.42 2.57 16 LS Contribution 280.36 15.07 4.23 4.23 Total: -1.00 -32.45 280.36 -8.36 -40.81 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.17 Total: -1.49 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -3.82 Total: -17.28 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.42 Total: -42.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.45 -8.36 -40.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.035 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds