Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31482 * 125.49399 * 2 1 4 4 N 1.40048 * 108.91415 * 180.26451 * 3 2 1 5 5 C 1.36538 * 132.42887 * 179.75313 * 4 3 2 6 6 C 1.34937 * 120.65346 * 179.97438 * 5 4 3 7 7 C 1.40474 * 120.43491 * 0.02786 * 6 5 4 8 8 C 1.36063 * 119.58808 * 359.97438 * 7 6 5 9 9 C 1.37123 * 107.44484 * 359.76639 * 4 3 2 10 10 C 1.38543 * 125.49730 * 179.86191 * 2 1 3 11 11 C 1.50696 * 126.22012 * 0.02562 * 10 2 1 12 12 C 1.52998 * 109.46969 * 269.68715 * 11 10 2 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.08998 * 109.47029 * 270.13444 * 1 2 3 22 22 H 1.08998 * 109.47578 * 30.13820 * 1 2 3 23 23 H 1.09000 * 109.46997 * 150.13902 * 1 2 3 24 24 H 1.07997 * 119.67530 * 0.02562 * 5 4 3 25 25 H 1.08000 * 119.78415 * 180.02562 * 6 5 4 26 26 H 1.07996 * 120.20357 * 179.97438 * 7 6 5 27 27 H 1.08005 * 120.38706 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47664 * 149.68644 * 11 10 2 29 29 H 1.09002 * 109.46824 * 29.68115 * 11 10 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 12 11 10 31 31 H 1.08998 * 109.47454 * 299.99809 * 12 11 10 32 32 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0705 0.0000 4 7 3.6126 0.6709 -0.0061 5 6 4.7831 1.3739 -0.0130 6 6 5.9705 0.7331 -0.0174 7 6 6.0215 -0.6708 -0.0157 8 6 4.8635 -1.3851 -0.0089 9 6 3.6333 -0.7002 -0.0045 10 6 2.3114 -1.1279 0.0027 11 6 1.8387 -2.5588 0.0056 12 6 1.6857 -3.0424 1.4491 13 6 1.2123 -4.4732 1.4521 14 1 1.0377 -4.9860 0.5178 15 6 1.0071 -5.1290 2.6474 16 7 1.2250 -4.5061 3.7850 17 14 0.4211 -6.9027 2.6511 18 1 1.5951 -7.8119 2.6391 19 1 -0.3875 -7.1542 3.8709 20 1 -0.4102 -7.1517 1.4460 21 1 -0.3633 0.0024 1.0276 22 1 -0.3634 0.8887 -0.5160 23 1 -0.3633 -0.8912 -0.5117 24 1 4.7583 2.4536 -0.0140 25 1 6.8878 1.3032 -0.0224 26 1 6.9740 -1.1798 -0.0197 27 1 4.8877 -2.4649 -0.0079 28 1 2.5672 -3.1833 -0.5114 29 1 0.8771 -2.6248 -0.5035 30 1 0.9571 -2.4180 1.9663 31 1 2.6472 -2.9764 1.9583 32 1 1.0811 -4.9675 4.6260 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 84.110717 kcal Electronic energy + Delta-G solvation = -15267.280026 eV Core-core repulsion = 12808.096569 eV Total energy + Delta-G solvation = -2459.183457 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64372 -37.20341 -34.24460 -32.69376 -31.42597 -30.82895 -28.20699 -27.22115 -24.70105 -23.18679 -21.87335 -20.66075 -19.38126 -16.88035 -16.39962 -16.08494 -15.47227 -15.29127 -14.42835 -14.37777 -13.10362 -13.08797 -12.95234 -12.57670 -12.23397 -12.10126 -11.66803 -11.46099 -11.22550 -11.01156 -10.89472 -10.65312 -10.26577 -10.06276 -9.67691 -9.37115 -9.02471 -8.83986 -8.30101 -6.97984 -5.94812 -3.97842 1.04382 1.39506 2.59081 3.07240 3.34219 3.40609 3.43886 3.69489 4.47861 4.51111 4.88707 4.92653 5.09960 5.32876 5.40340 5.52850 5.63711 5.81251 5.95609 6.00843 6.11240 6.20630 6.33032 6.40847 6.69928 6.74085 6.80149 6.97776 7.22615 7.28431 7.75904 7.88795 7.99888 8.07187 8.47223 9.10090 9.65973 11.15995 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.006651 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.737357 B = 4208.643615 C = 4782.800226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.100 3.900 3 N -0.329 5.329 4 N -0.281 5.281 5 C 0.105 3.895 6 C -0.170 4.170 7 C -0.107 4.107 8 C -0.090 4.090 9 C 0.088 3.912 10 C -0.208 4.208 11 C -0.035 4.035 12 C 0.031 3.969 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.160 0.840 25 H 0.147 0.853 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.038 9.475 -8.155 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 N -0.155 5.155 4 N -0.049 5.049 5 C -0.020 4.020 6 C -0.193 4.193 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.029 4.029 10 C -0.219 4.219 11 C -0.074 4.074 12 C -0.006 4.006 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.177 0.823 25 H 0.165 0.835 26 H 0.153 0.847 27 H 0.165 0.835 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.894 10.778 -7.964 15.070 hybrid contribution -0.109 -1.735 0.279 1.760 sum 6.785 9.043 -7.685 13.670 Atomic orbital electron populations 1.20231 0.86196 1.03042 1.03574 1.22137 0.97080 0.90088 0.96218 1.77682 0.83014 1.21685 1.33122 1.45994 1.05539 1.05625 1.47700 1.21303 0.82048 0.98140 1.00545 1.20691 0.96427 0.95231 1.06920 1.21015 0.98529 0.93622 0.99786 1.20716 0.89244 1.01111 0.99903 1.19376 0.95854 0.83529 1.04105 1.20415 0.89093 0.97941 1.14426 1.20090 0.99211 0.86989 1.01085 1.19059 0.97034 0.95229 0.89310 1.21288 1.44700 0.97582 0.92237 0.92626 1.25019 0.95710 0.97972 0.95704 1.69982 1.49409 1.36819 0.97238 0.86628 0.78771 0.85329 0.77475 1.20743 1.21299 1.19841 0.89932 0.91357 0.89740 0.82299 0.83540 0.84704 0.83515 0.92821 0.92264 0.96617 0.96850 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.23 36.00 0.37 -0.75 16 2 C 0.10 1.92 7.15 -82.63 -0.59 1.33 16 3 N -0.33 -6.31 12.66 33.51 0.42 -5.88 16 4 N -0.28 -5.01 3.90 -10.71 -0.04 -5.05 16 5 C 0.10 1.40 11.19 -16.63 -0.19 1.21 16 6 C -0.17 -1.90 9.98 -39.91 -0.40 -2.30 16 7 C -0.11 -1.32 10.07 -39.52 -0.40 -1.72 16 8 C -0.09 -1.42 10.09 -39.40 -0.40 -1.82 16 9 C 0.09 1.66 6.76 -84.27 -0.57 1.09 16 10 C -0.21 -4.22 5.44 -104.25 -0.57 -4.79 16 11 C -0.04 -0.76 5.44 -27.89 -0.15 -0.91 16 12 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.08 1.25 7.18 -51.93 -0.37 0.88 16 24 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 25 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 26 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.21 7.18 -51.93 -0.37 0.83 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -33.38 279.93 -7.22 -40.59 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.09 Total: -2.59 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -3.44 Total: -21.43 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 1.12 Total: -37.41 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.38 -7.22 -40.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.702 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds