Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31482 * 125.49399 * 2 1 4 4 N 1.40048 * 108.91415 * 180.26451 * 3 2 1 5 5 C 1.36538 * 132.42887 * 179.75313 * 4 3 2 6 6 C 1.34937 * 120.65346 * 179.97438 * 5 4 3 7 7 C 1.40474 * 120.43491 * 0.02786 * 6 5 4 8 8 C 1.36063 * 119.58808 * 359.97438 * 7 6 5 9 9 C 1.37123 * 107.44484 * 359.76639 * 4 3 2 10 10 C 1.38543 * 125.49730 * 179.86191 * 2 1 3 11 11 C 1.50696 * 126.22012 * 0.02562 * 10 2 1 12 12 C 1.52998 * 109.46969 * 269.68715 * 11 10 2 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.08998 * 109.47029 * 270.13444 * 1 2 3 22 22 H 1.08998 * 109.47578 * 30.13820 * 1 2 3 23 23 H 1.09000 * 109.46997 * 150.13902 * 1 2 3 24 24 H 1.07997 * 119.67530 * 0.02562 * 5 4 3 25 25 H 1.08000 * 119.78415 * 180.02562 * 6 5 4 26 26 H 1.07996 * 120.20357 * 179.97438 * 7 6 5 27 27 H 1.08005 * 120.38706 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.47664 * 149.68644 * 11 10 2 29 29 H 1.09002 * 109.46824 * 29.68115 * 11 10 2 30 30 H 1.09001 * 109.47671 * 59.99812 * 12 11 10 31 31 H 1.08998 * 109.47454 * 299.99809 * 12 11 10 32 32 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0705 0.0000 4 7 3.6126 0.6709 -0.0061 5 6 4.7831 1.3739 -0.0130 6 6 5.9705 0.7331 -0.0174 7 6 6.0215 -0.6708 -0.0157 8 6 4.8635 -1.3851 -0.0089 9 6 3.6333 -0.7002 -0.0045 10 6 2.3114 -1.1279 0.0027 11 6 1.8387 -2.5588 0.0056 12 6 1.6857 -3.0424 1.4491 13 6 1.2123 -4.4732 1.4521 14 1 1.0377 -4.9860 0.5178 15 6 1.0071 -5.1290 2.6474 16 7 1.2250 -4.5061 3.7850 17 14 0.4211 -6.9027 2.6511 18 1 1.5951 -7.8119 2.6391 19 1 -0.3875 -7.1542 3.8709 20 1 -0.4102 -7.1517 1.4460 21 1 -0.3633 0.0024 1.0276 22 1 -0.3634 0.8887 -0.5160 23 1 -0.3633 -0.8912 -0.5117 24 1 4.7583 2.4536 -0.0140 25 1 6.8878 1.3032 -0.0224 26 1 6.9740 -1.1798 -0.0197 27 1 4.8877 -2.4649 -0.0079 28 1 2.5672 -3.1833 -0.5114 29 1 0.8771 -2.6248 -0.5035 30 1 0.9571 -2.4180 1.9663 31 1 2.6472 -2.9764 1.9583 32 1 1.0811 -4.9675 4.6260 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 64.076202 kcal Electronic energy + Delta-G solvation = -15268.148788 eV Core-core repulsion = 12808.096569 eV Total energy + Delta-G solvation = -2460.052218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.93100 -38.39925 -36.04576 -34.41878 -32.79166 -32.34554 -29.68117 -28.64700 -26.52214 -24.32942 -23.56931 -22.17300 -20.80475 -18.54504 -18.04975 -17.38283 -16.69830 -16.52483 -16.39419 -15.60289 -14.78500 -14.68935 -14.25154 -14.11227 -13.68763 -13.59071 -13.24531 -12.87373 -12.75344 -12.59209 -12.35303 -12.31900 -11.87448 -11.76464 -11.44037 -11.15638 -10.98539 -10.52464 -10.09465 -8.34712 -8.13137 -6.28095 -0.08123 0.18146 1.40220 1.42315 1.43961 1.55243 1.69743 2.43716 2.52549 3.16684 3.30416 3.71136 3.94556 4.03726 4.21729 4.29622 4.44317 4.57667 4.68013 4.70910 4.93131 4.96698 5.01347 5.03608 5.17970 5.21369 5.35899 5.53608 5.59490 5.72073 5.80444 5.89026 6.04623 6.27924 6.64356 6.89494 7.41383 8.95865 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.006651 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.737357 B = 4208.643615 C = 4782.800226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.090 3.910 3 N -0.356 5.356 4 N -0.286 5.286 5 C 0.082 3.918 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.136 4.136 9 C 0.084 3.916 10 C -0.264 4.264 11 C -0.014 4.014 12 C 0.043 3.957 13 C -0.539 4.539 14 H 0.064 0.936 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.260 1.260 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.191 0.809 25 H 0.201 0.799 26 H 0.177 0.823 27 H 0.142 0.858 28 H 0.055 0.945 29 H 0.064 0.936 30 H -0.016 1.016 31 H -0.020 1.020 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.022 9.686 -9.105 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 N -0.183 5.183 4 N -0.052 5.052 5 C -0.042 4.042 6 C -0.170 4.170 7 C -0.096 4.096 8 C -0.156 4.156 9 C -0.035 4.035 10 C -0.275 4.275 11 C -0.052 4.052 12 C 0.006 3.994 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.184 1.184 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.208 0.792 25 H 0.218 0.782 26 H 0.194 0.806 27 H 0.160 0.840 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.002 0.998 31 H -0.002 1.002 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.874 11.007 -8.934 16.725 hybrid contribution -0.452 -1.676 0.580 1.830 sum 8.423 9.330 -8.354 15.093 Atomic orbital electron populations 1.20291 0.84684 1.04335 1.03511 1.22519 0.98344 0.89860 0.95768 1.77576 0.83866 1.21787 1.35060 1.46321 1.06249 1.05618 1.47032 1.22237 0.81337 0.99999 1.00667 1.21406 0.97486 0.94923 1.03193 1.21636 0.98819 0.94426 0.94755 1.20894 0.89614 1.01410 1.03674 1.19721 0.96382 0.84490 1.02861 1.20308 0.90592 0.97315 1.19250 1.19704 0.99625 0.88404 0.97508 1.18862 0.94032 0.94467 0.92030 1.21721 1.44636 0.98532 0.92814 0.91736 1.26009 0.95636 1.03065 0.95143 1.70136 1.50521 1.39018 0.98021 0.85428 0.78530 0.79081 0.77896 1.19716 1.20951 1.18436 0.90554 0.89047 0.89404 0.79175 0.78189 0.80558 0.83983 0.92591 0.91765 0.99757 1.00190 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.27 10.23 71.24 0.73 -1.54 16 2 C 0.09 3.59 7.15 42.68 0.31 3.89 16 3 N -0.36 -13.90 12.66 -47.89 -0.61 -14.51 16 4 N -0.29 -10.05 3.90 -187.78 -0.73 -10.78 16 5 C 0.08 1.95 11.19 83.20 0.93 2.88 16 6 C -0.15 -2.60 9.98 22.06 0.22 -2.38 16 7 C -0.07 -1.54 10.07 22.31 0.22 -1.31 16 8 C -0.14 -4.23 10.09 22.39 0.23 -4.00 16 9 C 0.08 3.23 6.76 39.11 0.26 3.49 16 10 C -0.26 -11.24 5.44 -19.62 -0.11 -11.35 16 11 C -0.01 -0.63 5.44 29.85 0.16 -0.47 16 12 C 0.04 2.42 4.96 29.85 0.15 2.57 16 13 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 14 H 0.06 3.55 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 16 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 17 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 21 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 22 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.09 2.72 7.18 -2.39 -0.02 2.70 16 24 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 25 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 26 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 27 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.74 7.18 -2.39 -0.02 2.73 16 30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.16 279.93 5.87 -70.29 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.10 Total: 5.54 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.80 Total: -38.93 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.05 Total: -83.63 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.16 5.87 -70.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.361 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds