Wall clock time and date at job start Mon Mar 30 2020 03:09:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.31482 * 125.49399 * 2 1
4 4 N 1.40048 * 108.91415 * 180.26451 * 3 2 1
5 5 C 1.36538 * 132.42887 * 179.75313 * 4 3 2
6 6 C 1.34937 * 120.65346 * 179.97438 * 5 4 3
7 7 C 1.40474 * 120.43491 * 0.02786 * 6 5 4
8 8 C 1.36063 * 119.58808 * 359.97438 * 7 6 5
9 9 C 1.37123 * 107.44484 * 359.76639 * 4 3 2
10 10 C 1.38543 * 125.49730 * 179.86191 * 2 1 3
11 11 C 1.50696 * 126.22012 * 0.02562 * 10 2 1
12 12 C 1.52998 * 109.46969 * 269.68715 * 11 10 2
13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10
14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11
15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11
16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12
17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12
18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13
19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13
20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13
21 21 H 1.08998 * 109.47029 * 270.13444 * 1 2 3
22 22 H 1.08998 * 109.47578 * 30.13820 * 1 2 3
23 23 H 1.09000 * 109.46997 * 150.13902 * 1 2 3
24 24 H 1.07997 * 119.67530 * 0.02562 * 5 4 3
25 25 H 1.08000 * 119.78415 * 180.02562 * 6 5 4
26 26 H 1.07996 * 120.20357 * 179.97438 * 7 6 5
27 27 H 1.08005 * 120.38706 * 179.97438 * 8 7 6
28 28 H 1.09000 * 109.47664 * 149.68644 * 11 10 2
29 29 H 1.09002 * 109.46824 * 29.68115 * 11 10 2
30 30 H 1.09001 * 109.47671 * 59.99812 * 12 11 10
31 31 H 1.08998 * 109.47454 * 299.99809 * 12 11 10
32 32 H 0.97004 * 120.00247 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2704 1.0705 0.0000
4 7 3.6126 0.6709 -0.0061
5 6 4.7831 1.3739 -0.0130
6 6 5.9705 0.7331 -0.0174
7 6 6.0215 -0.6708 -0.0157
8 6 4.8635 -1.3851 -0.0089
9 6 3.6333 -0.7002 -0.0045
10 6 2.3114 -1.1279 0.0027
11 6 1.8387 -2.5588 0.0056
12 6 1.6857 -3.0424 1.4491
13 6 1.2123 -4.4732 1.4521
14 1 1.0377 -4.9860 0.5178
15 6 1.0071 -5.1290 2.6474
16 7 1.2250 -4.5061 3.7850
17 14 0.4211 -6.9027 2.6511
18 1 1.5951 -7.8119 2.6391
19 1 -0.3875 -7.1542 3.8709
20 1 -0.4102 -7.1517 1.4460
21 1 -0.3633 0.0024 1.0276
22 1 -0.3634 0.8887 -0.5160
23 1 -0.3633 -0.8912 -0.5117
24 1 4.7583 2.4536 -0.0140
25 1 6.8878 1.3032 -0.0224
26 1 6.9740 -1.1798 -0.0197
27 1 4.8877 -2.4649 -0.0079
28 1 2.5672 -3.1833 -0.5114
29 1 0.8771 -2.6248 -0.5035
30 1 0.9571 -2.4180 1.9663
31 1 2.6472 -2.9764 1.9583
32 1 1.0811 -4.9675 4.6260
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261217029.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:26
Heat of formation + Delta-G solvation = 64.076202 kcal
Electronic energy + Delta-G solvation = -15268.148788 eV
Core-core repulsion = 12808.096569 eV
Total energy + Delta-G solvation = -2460.052218 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.93100 -38.39925 -36.04576 -34.41878 -32.79166 -32.34554 -29.68117 -28.64700
-26.52214 -24.32942 -23.56931 -22.17300 -20.80475 -18.54504 -18.04975 -17.38283
-16.69830 -16.52483 -16.39419 -15.60289 -14.78500 -14.68935 -14.25154 -14.11227
-13.68763 -13.59071 -13.24531 -12.87373 -12.75344 -12.59209 -12.35303 -12.31900
-11.87448 -11.76464 -11.44037 -11.15638 -10.98539 -10.52464 -10.09465 -8.34712
-8.13137 -6.28095 -0.08123 0.18146 1.40220 1.42315 1.43961 1.55243
1.69743 2.43716 2.52549 3.16684 3.30416 3.71136 3.94556 4.03726
4.21729 4.29622 4.44317 4.57667 4.68013 4.70910 4.93131 4.96698
5.01347 5.03608 5.17970 5.21369 5.35899 5.53608 5.59490 5.72073
5.80444 5.89026 6.04623 6.27924 6.64356 6.89494 7.41383 8.95865
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.031357 B = 0.006651 C = 0.005853
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 892.737357 B = 4208.643615 C = 4782.800226
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.090 3.910
3 N -0.356 5.356
4 N -0.286 5.286
5 C 0.082 3.918
6 C -0.149 4.149
7 C -0.074 4.074
8 C -0.136 4.136
9 C 0.084 3.916
10 C -0.264 4.264
11 C -0.014 4.014
12 C 0.043 3.957
13 C -0.539 4.539
14 H 0.064 0.936
15 C -0.001 4.001
16 N -0.936 5.936
17 Si 0.966 3.034
18 H -0.272 1.272
19 H -0.284 1.284
20 H -0.260 1.260
21 H 0.076 0.924
22 H 0.091 0.909
23 H 0.087 0.913
24 H 0.191 0.809
25 H 0.201 0.799
26 H 0.177 0.823
27 H 0.142 0.858
28 H 0.055 0.945
29 H 0.064 0.936
30 H -0.016 1.016
31 H -0.020 1.020
32 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.022 9.686 -9.105 16.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.065 4.065
3 N -0.183 5.183
4 N -0.052 5.052
5 C -0.042 4.042
6 C -0.170 4.170
7 C -0.096 4.096
8 C -0.156 4.156
9 C -0.035 4.035
10 C -0.275 4.275
11 C -0.052 4.052
12 C 0.006 3.994
13 C -0.577 4.577
14 H 0.083 0.917
15 C -0.199 4.199
16 N -0.577 5.577
17 Si 0.791 3.209
18 H -0.197 1.197
19 H -0.210 1.210
20 H -0.184 1.184
21 H 0.094 0.906
22 H 0.110 0.890
23 H 0.106 0.894
24 H 0.208 0.792
25 H 0.218 0.782
26 H 0.194 0.806
27 H 0.160 0.840
28 H 0.074 0.926
29 H 0.082 0.918
30 H 0.002 0.998
31 H -0.002 1.002
32 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 8.874 11.007 -8.934 16.725
hybrid contribution -0.452 -1.676 0.580 1.830
sum 8.423 9.330 -8.354 15.093
Atomic orbital electron populations
1.20291 0.84684 1.04335 1.03511 1.22519 0.98344 0.89860 0.95768
1.77576 0.83866 1.21787 1.35060 1.46321 1.06249 1.05618 1.47032
1.22237 0.81337 0.99999 1.00667 1.21406 0.97486 0.94923 1.03193
1.21636 0.98819 0.94426 0.94755 1.20894 0.89614 1.01410 1.03674
1.19721 0.96382 0.84490 1.02861 1.20308 0.90592 0.97315 1.19250
1.19704 0.99625 0.88404 0.97508 1.18862 0.94032 0.94467 0.92030
1.21721 1.44636 0.98532 0.92814 0.91736 1.26009 0.95636 1.03065
0.95143 1.70136 1.50521 1.39018 0.98021 0.85428 0.78530 0.79081
0.77896 1.19716 1.20951 1.18436 0.90554 0.89047 0.89404 0.79175
0.78189 0.80558 0.83983 0.92591 0.91765 0.99757 1.00190 0.92917
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.27 10.23 71.24 0.73 -1.54 16
2 C 0.09 3.59 7.15 42.68 0.31 3.89 16
3 N -0.36 -13.90 12.66 -47.89 -0.61 -14.51 16
4 N -0.29 -10.05 3.90 -187.78 -0.73 -10.78 16
5 C 0.08 1.95 11.19 83.20 0.93 2.88 16
6 C -0.15 -2.60 9.98 22.06 0.22 -2.38 16
7 C -0.07 -1.54 10.07 22.31 0.22 -1.31 16
8 C -0.14 -4.23 10.09 22.39 0.23 -4.00 16
9 C 0.08 3.23 6.76 39.11 0.26 3.49 16
10 C -0.26 -11.24 5.44 -19.62 -0.11 -11.35 16
11 C -0.01 -0.63 5.44 29.85 0.16 -0.47 16
12 C 0.04 2.42 4.96 29.85 0.15 2.57 16
13 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16
14 H 0.06 3.55 7.74 -2.91 -0.02 3.52 16
15 C 0.00 -0.07 5.46 84.65 0.46 0.39 16
16 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16
17 Si 0.97 44.72 29.54 68.60 2.03 46.74 16
18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16
19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
20 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16
21 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16
22 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16
23 H 0.09 2.72 7.18 -2.39 -0.02 2.70 16
24 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16
25 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16
26 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16
27 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16
28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16
29 H 0.06 2.74 7.18 -2.39 -0.02 2.73 16
30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
31 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16
32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16
Total: -1.00 -76.16 279.93 5.87 -70.29
By element:
Atomic # 1 Polarization: 4.43 SS G_CDS: 1.10 Total: 5.54 kcal
Atomic # 6 Polarization: -42.73 SS G_CDS: 3.80 Total: -38.93 kcal
Atomic # 7 Polarization: -82.58 SS G_CDS: -1.05 Total: -83.63 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -76.16 5.87 -70.29 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261217029.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.361 kcal
(2) G-P(sol) polarization free energy of solvation -76.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.285 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds