Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38546 * 125.49479 * 2 1 4 4 C 1.38930 * 107.56621 * 179.97438 * 3 2 1 5 5 C 1.40796 * 132.96410 * 180.02562 * 4 3 2 6 6 C 1.36072 * 119.22463 * 179.69607 * 5 4 3 7 7 C 1.40475 * 119.58849 * 0.56203 * 6 5 4 8 8 C 1.50696 * 119.78327 * 179.71729 * 7 6 5 9 9 H 1.09001 * 109.47085 * 179.72816 * 8 7 6 10 10 C 1.53000 * 109.47107 * 59.73658 * 8 7 6 11 11 C 1.50693 * 109.47590 * 299.73095 * 8 7 6 12 12 H 1.08005 * 120.00160 * 5.42249 * 11 8 7 13 13 C 1.37882 * 120.00097 * 185.13678 * 11 8 7 14 14 N 1.31512 * 120.00147 * 355.41634 * 13 11 8 15 15 Si 1.86805 * 119.99918 * 175.41124 * 13 11 8 16 16 H 1.48497 * 109.46815 * 95.00152 * 15 13 11 17 17 H 1.48500 * 109.47128 * 215.00647 * 15 13 11 18 18 H 1.48502 * 109.46969 * 335.00369 * 15 13 11 19 19 C 1.34937 * 120.42974 * 359.45705 * 7 6 5 20 20 N 1.36531 * 120.66052 * 0.24138 * 19 7 6 21 21 N 1.31481 * 125.49722 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47263 * 90.00100 * 1 2 3 23 23 H 1.09003 * 109.46892 * 209.99887 * 1 2 3 24 24 H 1.09001 * 109.46986 * 329.99765 * 1 2 3 25 25 H 1.08003 * 126.21695 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.38935 * 359.97438 * 5 4 3 27 27 H 1.07994 * 120.20944 * 180.30820 * 6 5 4 28 28 H 1.09003 * 109.46762 * 294.92446 * 10 8 7 29 29 H 1.09005 * 109.46994 * 54.91791 * 10 8 7 30 30 H 1.08994 * 109.47338 * 174.92574 * 10 8 7 31 31 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.66717 * 180.27492 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1280 0.0000 4 6 3.6333 0.7003 0.0006 5 6 4.8635 1.3852 0.0013 6 6 6.0216 0.6709 0.0081 7 6 5.9706 -0.7330 0.0022 8 6 7.2506 -1.5284 0.0032 9 1 7.0167 -2.5930 0.0030 10 6 8.0633 -1.1852 1.2532 11 6 8.0533 -1.1902 -1.2265 12 1 7.7179 -0.4087 -1.8923 13 6 9.2190 -1.8744 -1.4985 14 7 9.6781 -2.7587 -0.6401 15 14 10.1463 -1.5453 -3.0865 16 1 11.2114 -0.5407 -2.8386 17 1 10.7595 -2.8075 -3.5723 18 1 9.2048 -1.0261 -4.1109 19 6 4.7831 -1.3738 0.0010 20 7 3.6127 -0.6708 0.0005 21 7 2.2705 -1.0704 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.9726 2.1535 -0.0004 26 1 4.8876 2.4649 0.0011 27 1 6.9740 1.1799 0.0138 28 1 8.3740 -0.1413 1.2093 29 1 7.4504 -1.3449 2.1403 30 1 8.9446 -1.8248 1.3005 31 1 10.4980 -3.2403 -0.8317 32 1 4.7584 -2.4535 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = 85.655012 kcal Electronic energy + Delta-G solvation = -15275.583382 eV Core-core repulsion = 12816.466891 eV Total energy + Delta-G solvation = -2459.116491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.49320 -37.49696 -34.22905 -32.62237 -31.72153 -29.71333 -28.47585 -26.63600 -25.22392 -22.91487 -22.28470 -20.70589 -19.28103 -17.05917 -16.19997 -15.80698 -15.19156 -15.13945 -14.30381 -14.12369 -13.38586 -13.19962 -12.75726 -12.72177 -12.45841 -11.75399 -11.62745 -11.30814 -11.21820 -11.02402 -10.62790 -10.41406 -10.31493 -10.17958 -9.93131 -9.73797 -9.13414 -8.54175 -8.40925 -7.04744 -6.13951 -4.20826 1.33835 1.70741 2.75095 3.05170 3.23234 3.31348 3.35328 3.98061 4.34966 4.67142 4.94802 5.18600 5.34626 5.39445 5.54261 5.60548 5.63103 5.75345 5.85044 6.04907 6.17697 6.35079 6.55857 6.64989 6.80193 6.89632 6.99086 6.99866 7.12197 7.43055 7.55042 7.75598 7.90506 8.05599 8.21042 8.81179 9.44820 10.92585 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044389 B = 0.006032 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.639082 B = 4640.674817 C = 4695.149189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.087 3.913 3 C -0.311 4.311 4 C 0.107 3.893 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.068 4.068 8 C 0.084 3.916 9 H 0.042 0.958 10 C -0.130 4.130 11 C -0.515 4.515 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.072 3.928 20 N -0.261 5.261 21 N -0.337 5.337 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.033 0.967 29 H 0.010 0.990 30 H 0.082 0.918 31 H 0.263 0.737 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 6.520 2.051 12.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.069 4.069 3 C -0.340 4.340 4 C -0.013 4.013 5 C -0.162 4.162 6 C -0.071 4.071 7 C -0.072 4.072 8 C 0.064 3.936 9 H 0.060 0.940 10 C -0.187 4.187 11 C -0.553 4.553 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.051 4.051 20 N -0.026 5.026 21 N -0.164 5.164 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.095 5.043 2.078 11.474 hybrid contribution 0.669 1.000 -0.925 1.518 sum -9.426 6.043 1.153 11.255 Atomic orbital electron populations 1.20150 0.86820 1.03006 1.02755 1.22043 0.96667 0.90825 0.97336 1.20956 0.89402 0.99202 1.24452 1.19609 0.95837 0.84138 1.01744 1.20556 0.89420 1.00196 1.06063 1.21303 0.98442 0.93906 0.93445 1.20400 0.95432 0.94581 0.96773 1.17821 0.86051 0.94322 0.95371 0.94029 1.21788 1.01247 1.00676 0.95032 1.21025 1.06991 1.20022 1.07227 0.92293 1.24939 0.97068 0.94963 0.96706 1.69900 1.21978 1.25755 1.34819 0.86545 0.79908 0.77779 0.83633 1.20631 1.21074 1.19807 1.21450 0.80889 0.98324 1.04477 1.46144 1.05514 1.05508 1.45403 1.77711 0.83429 1.21688 1.33541 0.90651 0.91084 0.90557 0.83769 0.84305 0.84002 0.94819 0.97057 0.89939 0.92750 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.43 36.01 0.38 -0.40 16 2 C 0.09 1.43 7.15 -82.63 -0.59 0.84 16 3 C -0.31 -5.08 10.83 -39.21 -0.42 -5.50 16 4 C 0.11 1.97 6.81 -84.27 -0.57 1.39 16 5 C -0.14 -2.37 10.11 -39.39 -0.40 -2.77 16 6 C -0.05 -0.87 8.75 -39.52 -0.35 -1.22 16 7 C -0.07 -1.39 4.70 -104.95 -0.49 -1.88 16 8 C 0.08 1.94 2.41 -92.93 -0.22 1.71 16 9 H 0.04 1.03 7.81 -51.93 -0.41 0.63 16 10 C -0.13 -2.87 8.69 37.16 0.32 -2.55 16 11 C -0.51 -13.12 8.21 -34.44 -0.28 -13.41 16 12 H 0.06 1.50 7.55 -52.48 -0.40 1.10 16 13 C 0.07 1.71 5.36 -17.82 -0.10 1.62 16 14 N -0.89 -23.97 11.58 55.43 0.64 -23.32 16 15 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.07 1.44 10.80 -16.63 -0.18 1.26 16 20 N -0.26 -5.20 3.90 -10.71 -0.04 -5.24 16 21 N -0.34 -6.56 12.66 33.51 0.42 -6.13 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 26 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.14 2.44 7.65 -52.49 -0.40 2.04 16 28 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 2.02 6.45 -51.93 -0.33 1.68 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.16 3.00 7.87 -52.49 -0.41 2.59 16 LS Contribution 275.15 15.07 4.15 4.15 Total: -1.00 -28.76 275.15 -6.78 -35.54 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.02 Total: 0.56 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.91 Total: -20.90 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 1.02 Total: -34.69 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.76 -6.78 -35.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.193 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds