Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38546 * 125.49479 * 2 1 4 4 C 1.38930 * 107.56621 * 179.97438 * 3 2 1 5 5 C 1.40796 * 132.96410 * 180.02562 * 4 3 2 6 6 C 1.36072 * 119.22463 * 179.69607 * 5 4 3 7 7 C 1.40475 * 119.58849 * 0.56203 * 6 5 4 8 8 C 1.50696 * 119.78327 * 179.71729 * 7 6 5 9 9 H 1.09001 * 109.47085 * 179.72816 * 8 7 6 10 10 C 1.53000 * 109.47107 * 59.73658 * 8 7 6 11 11 C 1.50693 * 109.47590 * 299.73095 * 8 7 6 12 12 H 1.08005 * 120.00160 * 5.42249 * 11 8 7 13 13 C 1.37882 * 120.00097 * 185.13678 * 11 8 7 14 14 N 1.31512 * 120.00147 * 355.41634 * 13 11 8 15 15 Si 1.86805 * 119.99918 * 175.41124 * 13 11 8 16 16 H 1.48497 * 109.46815 * 95.00152 * 15 13 11 17 17 H 1.48500 * 109.47128 * 215.00647 * 15 13 11 18 18 H 1.48502 * 109.46969 * 335.00369 * 15 13 11 19 19 C 1.34937 * 120.42974 * 359.45705 * 7 6 5 20 20 N 1.36531 * 120.66052 * 0.24138 * 19 7 6 21 21 N 1.31481 * 125.49722 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47263 * 90.00100 * 1 2 3 23 23 H 1.09003 * 109.46892 * 209.99887 * 1 2 3 24 24 H 1.09001 * 109.46986 * 329.99765 * 1 2 3 25 25 H 1.08003 * 126.21695 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.38935 * 359.97438 * 5 4 3 27 27 H 1.07994 * 120.20944 * 180.30820 * 6 5 4 28 28 H 1.09003 * 109.46762 * 294.92446 * 10 8 7 29 29 H 1.09005 * 109.46994 * 54.91791 * 10 8 7 30 30 H 1.08994 * 109.47338 * 174.92574 * 10 8 7 31 31 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 32 32 H 1.07998 * 119.66717 * 180.27492 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1280 0.0000 4 6 3.6333 0.7003 0.0006 5 6 4.8635 1.3852 0.0013 6 6 6.0216 0.6709 0.0081 7 6 5.9706 -0.7330 0.0022 8 6 7.2506 -1.5284 0.0032 9 1 7.0167 -2.5930 0.0030 10 6 8.0633 -1.1852 1.2532 11 6 8.0533 -1.1902 -1.2265 12 1 7.7179 -0.4087 -1.8923 13 6 9.2190 -1.8744 -1.4985 14 7 9.6781 -2.7587 -0.6401 15 14 10.1463 -1.5453 -3.0865 16 1 11.2114 -0.5407 -2.8386 17 1 10.7595 -2.8075 -3.5723 18 1 9.2048 -1.0261 -4.1109 19 6 4.7831 -1.3738 0.0010 20 7 3.6127 -0.6708 0.0005 21 7 2.2705 -1.0704 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.9726 2.1535 -0.0004 26 1 4.8876 2.4649 0.0011 27 1 6.9740 1.1799 0.0138 28 1 8.3740 -0.1413 1.2093 29 1 7.4504 -1.3449 2.1403 30 1 8.9446 -1.8248 1.3005 31 1 10.4980 -3.2403 -0.8317 32 1 4.7584 -2.4535 0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = 70.582568 kcal Electronic energy + Delta-G solvation = -15276.236972 eV Core-core repulsion = 12816.466891 eV Total energy + Delta-G solvation = -2459.770081 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.86046 -38.96933 -35.94161 -33.98263 -33.41119 -31.14950 -29.81377 -27.98632 -27.18300 -24.32531 -23.79518 -22.22308 -20.72204 -18.69163 -17.81083 -17.33089 -16.86675 -16.55706 -15.92404 -15.45322 -14.80797 -14.51764 -14.13401 -14.05489 -13.56563 -13.43952 -13.14075 -12.97176 -12.83896 -12.60510 -12.34148 -12.17488 -11.92417 -11.53482 -11.52536 -11.31859 -10.96956 -10.49899 -9.91599 -8.43767 -8.11227 -6.24770 -0.05028 0.29127 1.36978 1.42550 1.45584 1.54706 1.77566 2.41812 2.58925 3.18234 3.39389 3.71170 4.02312 4.04551 4.20866 4.45532 4.46466 4.73412 4.82062 4.83227 4.86907 4.96378 5.07621 5.15883 5.18998 5.26581 5.35140 5.58094 5.66405 5.79837 5.85208 5.98513 6.08586 6.28218 6.70769 6.82962 7.43420 8.93544 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044389 B = 0.006032 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.639082 B = 4640.674817 C = 4695.149189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.083 3.917 3 C -0.301 4.301 4 C 0.082 3.918 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.077 4.077 8 C 0.085 3.915 9 H 0.012 0.988 10 C -0.118 4.118 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.019 3.981 14 N -0.915 5.915 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.059 3.941 20 N -0.280 5.280 21 N -0.374 5.374 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.150 0.850 28 H 0.042 0.958 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.262 0.738 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.635 8.845 1.672 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.330 4.330 4 C -0.038 4.038 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.081 4.081 8 C 0.065 3.935 9 H 0.030 0.970 10 C -0.176 4.176 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.181 4.181 14 N -0.554 5.554 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.064 4.064 20 N -0.045 5.045 21 N -0.200 5.200 22 H 0.110 0.890 23 H 0.092 0.908 24 H 0.124 0.876 25 H 0.198 0.802 26 H 0.198 0.802 27 H 0.168 0.832 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.629 7.380 1.702 13.878 hybrid contribution 0.970 0.312 -0.786 1.287 sum -10.659 7.691 0.916 13.176 Atomic orbital electron populations 1.20367 0.83221 1.04644 1.04275 1.22930 0.98838 0.90071 0.95397 1.21494 0.88387 1.00830 1.22317 1.20233 0.97430 0.83739 1.02391 1.20956 0.87985 1.01952 1.02996 1.21336 0.99637 0.92828 0.95109 1.20097 0.94132 0.95594 0.98308 1.17645 0.87538 0.93145 0.95134 0.96961 1.21614 1.00195 1.00480 0.95326 1.21302 1.07149 1.19708 1.07918 0.92529 1.25653 0.98047 0.94975 0.99376 1.70021 1.22386 1.26686 1.36282 0.85621 0.78753 0.77557 0.80203 1.19825 1.21184 1.19681 1.21321 0.81456 0.98351 1.05313 1.46221 1.05461 1.06267 1.46588 1.77679 0.83651 1.23799 1.34906 0.89023 0.90802 0.87603 0.80224 0.80223 0.83224 0.93900 0.95534 0.92577 0.92835 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.43 71.24 0.74 -0.52 16 2 C 0.08 2.52 7.15 42.69 0.31 2.83 16 3 C -0.30 -8.81 10.83 22.51 0.24 -8.57 16 4 C 0.08 2.83 6.81 39.11 0.27 3.09 16 5 C -0.12 -3.66 10.11 22.39 0.23 -3.43 16 6 C -0.07 -2.34 8.75 22.31 0.20 -2.14 16 7 C -0.08 -3.20 4.70 -20.08 -0.09 -3.30 16 8 C 0.08 4.04 2.41 -12.29 -0.03 4.01 16 9 H 0.01 0.64 7.81 -2.39 -0.02 0.62 16 10 C -0.12 -5.34 8.69 71.98 0.63 -4.71 16 11 C -0.52 -27.07 8.21 25.60 0.21 -26.86 16 12 H 0.06 2.89 7.55 -2.91 -0.02 2.87 16 13 C 0.02 1.00 5.36 84.66 0.45 1.45 16 14 N -0.91 -50.61 11.58 21.45 0.25 -50.36 16 15 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 C 0.06 2.43 10.80 83.20 0.90 3.33 16 20 N -0.28 -11.07 3.90 -187.79 -0.73 -11.81 16 21 N -0.37 -14.26 12.66 -47.88 -0.61 -14.86 16 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 26 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 27 H 0.15 4.96 7.65 -2.91 -0.02 4.93 16 28 H 0.04 1.80 7.57 -2.39 -0.02 1.78 16 29 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.06 2.82 6.45 -2.39 -0.02 2.80 16 31 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.16 6.23 7.87 -2.91 -0.02 6.20 16 Total: -1.00 -62.56 275.15 6.09 -56.47 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.11 Total: 11.34 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.04 Total: -34.81 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.09 Total: -77.03 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.56 6.09 -56.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.052 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds