Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38552 * 125.49399 * 2 1 4 4 C 1.38931 * 107.56347 * 179.97438 * 3 2 1 5 5 C 1.40790 * 132.96071 * 180.02562 * 4 3 2 6 6 C 1.36072 * 119.22564 * 179.97438 * 5 4 3 7 7 C 1.40472 * 119.58571 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.77886 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47092 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.47286 * 300.01888 * 8 7 6 11 11 C 1.50701 * 109.47150 * 60.01920 * 8 7 6 12 12 H 1.07996 * 119.99913 * 0.02562 * 11 8 7 13 13 C 1.37881 * 119.99847 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00040 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99849 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47139 * 60.00059 * 15 13 11 17 17 H 1.48501 * 109.46952 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47132 * 299.99882 * 15 13 11 19 19 C 1.34932 * 120.43436 * 359.97438 * 7 6 5 20 20 N 1.36538 * 120.65880 * 0.28663 * 19 7 6 21 21 N 1.31482 * 125.49756 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47043 * 89.99864 * 1 2 3 23 23 H 1.08996 * 109.46822 * 209.99675 * 1 2 3 24 24 H 1.09003 * 109.46812 * 329.99951 * 1 2 3 25 25 H 1.07994 * 126.21651 * 359.96733 * 3 2 1 26 26 H 1.08003 * 120.38898 * 359.97438 * 5 4 3 27 27 H 1.07996 * 120.20081 * 180.02562 * 6 5 4 28 28 H 1.08996 * 109.47098 * 59.99951 * 10 8 7 29 29 H 1.08997 * 109.47244 * 180.02562 * 10 8 7 30 30 H 1.08999 * 109.47247 * 300.00008 * 10 8 7 31 31 H 0.97002 * 120.00195 * 179.97438 * 14 13 11 32 32 H 1.08002 * 119.66669 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3115 1.1281 0.0000 4 6 3.6334 0.7003 0.0006 5 6 4.8635 1.3852 0.0013 6 6 6.0216 0.6709 0.0023 7 6 5.9706 -0.7329 0.0020 8 6 7.2506 -1.5283 0.0026 9 1 7.0168 -2.5929 0.0018 10 6 8.0653 -1.1844 -1.2459 11 6 8.0514 -1.1906 1.2337 12 1 7.6713 -0.4723 1.9449 13 6 9.2689 -1.7997 1.4527 14 7 9.7315 -2.6749 0.5869 15 14 10.2612 -1.3816 2.9792 16 1 9.4700 -1.7155 4.1907 17 1 11.5225 -2.1654 2.9796 18 1 10.5802 0.0687 2.9803 19 6 4.7832 -1.3737 0.0013 20 7 3.6127 -0.6708 -0.0050 21 7 2.2706 -1.0704 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.9726 2.1534 -0.0005 26 1 4.8876 2.4650 0.0011 27 1 6.9740 1.1801 0.0033 28 1 8.2992 -0.1198 -1.2453 29 1 8.9909 -1.7600 -1.2458 30 1 7.4862 -1.4286 -2.1364 31 1 10.5882 -3.1031 0.7408 32 1 4.7584 -2.4534 0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = 71.484136 kcal Electronic energy + Delta-G solvation = -15280.157258 eV Core-core repulsion = 12820.426272 eV Total energy + Delta-G solvation = -2459.730986 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.86267 -38.97368 -35.96756 -33.98301 -33.40059 -31.12879 -29.81508 -27.98087 -27.19181 -24.32482 -23.79744 -22.22526 -20.72420 -18.67171 -17.81098 -17.33097 -16.87616 -16.55759 -15.93246 -15.45516 -14.81621 -14.49964 -14.15160 -14.04311 -13.56473 -13.48557 -13.12473 -12.95082 -12.79953 -12.60183 -12.35635 -12.11324 -11.93293 -11.56111 -11.52793 -11.32152 -10.98994 -10.47519 -9.91792 -8.43824 -8.09793 -6.24986 -0.05258 0.28943 1.36774 1.45000 1.46076 1.53222 1.77429 2.42182 2.58871 3.18061 3.39327 3.71055 4.02339 4.04518 4.20662 4.45312 4.46474 4.73757 4.81959 4.83451 4.87046 4.96480 5.07554 5.16311 5.19330 5.26406 5.35242 5.58110 5.66657 5.79687 5.85312 6.01323 6.09322 6.29329 6.70599 6.82223 7.43513 8.93636 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045753 B = 0.006008 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.830701 B = 4659.449209 C = 4722.129883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.083 3.917 3 C -0.301 4.301 4 C 0.082 3.918 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.078 4.078 8 C 0.085 3.915 9 H 0.010 0.990 10 C -0.123 4.123 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.020 3.980 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.059 3.941 20 N -0.280 5.280 21 N -0.373 5.373 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.263 0.737 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 8.795 -1.638 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.330 4.330 4 C -0.038 4.038 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.082 4.082 8 C 0.066 3.934 9 H 0.028 0.972 10 C -0.181 4.181 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.180 4.180 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.064 4.064 20 N -0.045 5.045 21 N -0.200 5.200 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.198 0.802 26 H 0.198 0.802 27 H 0.167 0.833 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.575 7.338 -1.680 13.808 hybrid contribution 0.970 0.360 0.747 1.276 sum -10.605 7.699 -0.932 13.138 Atomic orbital electron populations 1.20368 0.83212 1.04589 1.04335 1.22934 0.98841 0.90066 0.95387 1.21496 0.88384 1.00832 1.22319 1.20229 0.97424 0.83741 1.02379 1.20955 0.87984 1.01950 1.03032 1.21333 0.99623 0.92837 0.95059 1.20098 0.94123 0.95601 0.98333 1.17634 0.87545 0.93035 0.95205 0.97163 1.21638 1.01058 1.00256 0.95122 1.21267 1.03708 1.24825 1.06370 0.92637 1.25646 0.98486 0.94766 0.99078 1.69988 1.20345 1.28259 1.36733 0.85685 0.77830 0.78654 0.79943 1.20329 1.21075 1.19143 1.21326 0.81454 0.98358 1.05310 1.46223 1.05459 1.06263 1.46600 1.77679 0.83650 1.23798 1.34901 0.88859 0.90876 0.87682 0.80224 0.80230 0.83261 0.93968 0.91838 0.95721 0.92800 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.43 71.24 0.74 -0.52 16 2 C 0.08 2.53 7.15 42.69 0.31 2.83 16 3 C -0.30 -8.82 10.83 22.51 0.24 -8.58 16 4 C 0.08 2.84 6.81 39.11 0.27 3.10 16 5 C -0.12 -3.68 10.11 22.39 0.23 -3.45 16 6 C -0.07 -2.33 8.74 22.31 0.20 -2.14 16 7 C -0.08 -3.22 4.69 -20.08 -0.09 -3.31 16 8 C 0.09 4.07 2.46 -12.29 -0.03 4.04 16 9 H 0.01 0.54 7.81 -2.39 -0.02 0.52 16 10 C -0.12 -5.58 8.78 71.98 0.63 -4.95 16 11 C -0.52 -27.13 8.24 25.60 0.21 -26.92 16 12 H 0.06 2.84 7.60 -2.91 -0.02 2.82 16 13 C 0.02 1.03 5.30 84.66 0.45 1.48 16 14 N -0.91 -50.41 11.32 21.45 0.24 -50.17 16 15 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 C 0.06 2.43 10.80 83.20 0.90 3.33 16 20 N -0.28 -11.08 3.90 -187.79 -0.73 -11.82 16 21 N -0.37 -14.25 12.66 -47.87 -0.61 -14.86 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 26 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.15 4.99 7.61 -2.91 -0.02 4.97 16 28 H 0.04 1.77 7.40 -2.39 -0.02 1.75 16 29 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.16 6.23 7.87 -2.91 -0.02 6.21 16 Total: -1.00 -62.31 274.46 6.09 -56.22 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.11 Total: 11.85 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 4.05 Total: -35.09 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.10 Total: -76.85 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -62.31 6.09 -56.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.708 kcal (2) G-P(sol) polarization free energy of solvation -62.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds