Wall clock time and date at job start Mon Mar 30 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40472 * 119.78640 * 2 1 4 4 C 1.36060 * 119.59304 * 180.02562 * 3 2 1 5 5 C 1.40802 * 119.22395 * 0.02562 * 4 3 2 6 6 C 1.38931 * 132.96323 * 179.97438 * 5 4 3 7 7 C 1.50704 * 126.21650 * 0.08828 * 6 5 4 8 8 C 1.52996 * 109.46989 * 84.99797 * 7 6 5 9 9 C 1.50704 * 109.46989 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99879 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00171 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99918 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00085 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47260 * 89.99825 * 13 11 9 15 15 H 1.48501 * 109.46948 * 209.99856 * 13 11 9 16 16 H 1.48497 * 109.46967 * 329.99591 * 13 11 9 17 17 C 1.38547 * 107.56568 * 180.02562 * 6 5 4 18 18 N 1.31479 * 109.00900 * 359.97438 * 17 6 5 19 19 N 1.37126 * 119.97151 * 0.02562 * 5 4 3 20 20 C 1.34934 * 119.78376 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46718 * 269.97288 * 1 2 3 22 22 H 1.08998 * 109.47067 * 29.97413 * 1 2 3 23 23 H 1.08996 * 109.47286 * 149.97768 * 1 2 3 24 24 H 1.07997 * 120.19942 * 0.05149 * 3 2 1 25 25 H 1.07996 * 120.38653 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.46980 * 205.00409 * 7 6 5 27 27 H 1.08999 * 109.46751 * 324.99898 * 7 6 5 28 28 H 1.08998 * 109.47308 * 299.99957 * 8 7 6 29 29 H 1.08999 * 109.47292 * 60.00432 * 8 7 6 30 30 H 0.97001 * 120.00005 * 180.02562 * 12 11 9 31 31 H 1.08001 * 125.49305 * 180.02562 * 17 6 5 32 32 H 1.08004 * 119.66904 * 359.69697 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2191 0.0000 4 6 3.5654 1.2145 -0.0005 5 6 4.2487 -0.0166 -0.0016 6 6 5.5971 -0.3511 -0.0028 7 6 6.7541 0.6146 -0.0014 8 6 7.0656 1.0351 1.4363 9 6 8.2230 2.0003 1.4377 10 1 8.6894 2.2856 0.5063 11 6 8.6864 2.5192 2.6281 12 7 8.1182 2.1722 3.7622 13 14 10.1206 3.7162 2.6298 14 1 9.6068 5.1044 2.5113 15 1 10.8806 3.5761 3.8978 16 1 11.0143 3.4194 1.4816 17 6 5.6849 -1.7338 -0.0041 18 7 4.4715 -2.2399 -0.0032 19 7 3.5425 -1.1920 -0.0027 20 6 2.1773 -1.1711 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6646 2.1543 0.0008 25 1 4.1148 2.1443 -0.0010 26 1 7.6297 0.1332 -0.4371 27 1 6.4933 1.4948 -0.5891 28 1 6.1900 1.5165 1.8718 29 1 7.3264 0.1549 2.0239 30 1 8.4440 2.5376 4.5996 31 1 6.6022 -2.3039 -0.0048 32 1 1.6283 -2.1012 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:50 Heat of formation + Delta-G solvation = 63.772439 kcal Electronic energy + Delta-G solvation = -15068.902412 eV Core-core repulsion = 12608.837021 eV Total energy + Delta-G solvation = -2460.065391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.93625 -38.61262 -36.05677 -34.33930 -33.18244 -32.50215 -29.61962 -27.75048 -26.36099 -24.35831 -23.37901 -22.66336 -21.14096 -18.56612 -18.11533 -17.41839 -16.65032 -16.40513 -16.15040 -15.67528 -14.86071 -14.76359 -14.31374 -14.17186 -13.78690 -13.29427 -13.06896 -13.03639 -12.76017 -12.65300 -12.32215 -12.24513 -11.92277 -11.80174 -11.45426 -11.19398 -11.02043 -10.52702 -10.05640 -8.35054 -8.13609 -6.28341 -0.11910 0.14130 1.39061 1.42308 1.44060 1.55327 1.74063 2.42402 2.46477 3.16537 3.31213 3.73939 3.88258 3.93449 4.06762 4.33878 4.52470 4.61765 4.64271 4.81071 4.91131 4.95725 4.98804 5.18426 5.23445 5.28723 5.34121 5.53714 5.57364 5.67324 5.80225 5.88583 5.98472 6.27685 6.60258 6.89439 7.41220 8.95615 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.005778 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.429305 B = 4844.774819 C = 5270.886544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.120 4.120 3 C -0.076 4.076 4 C -0.125 4.125 5 C 0.080 3.920 6 C -0.257 4.257 7 C -0.016 4.016 8 C 0.040 3.960 9 C -0.540 4.540 10 H 0.065 0.935 11 C -0.001 4.001 12 N -0.937 5.937 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.261 1.261 17 C 0.067 3.933 18 N -0.353 5.353 19 N -0.282 5.282 20 C 0.075 3.925 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.175 0.825 25 H 0.145 0.855 26 H 0.065 0.935 27 H 0.058 0.942 28 H -0.016 1.016 29 H -0.018 1.018 30 H 0.262 0.738 31 H 0.207 0.793 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.395 -2.745 -8.966 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.098 4.098 4 C -0.145 4.145 5 C -0.039 4.039 6 C -0.268 4.268 7 C -0.055 4.055 8 C 0.002 3.998 9 C -0.578 4.578 10 H 0.083 0.917 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.791 3.209 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.107 4.107 18 N -0.178 5.178 19 N -0.048 5.048 20 C -0.049 4.049 21 H 0.103 0.897 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.192 0.808 25 H 0.163 0.837 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.001 0.999 30 H 0.071 0.929 31 H 0.223 0.777 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.969 -3.952 -8.799 18.656 hybrid contribution 1.581 1.069 0.559 1.989 sum -14.388 -2.883 -8.240 16.829 Atomic orbital electron populations 1.20745 0.85538 1.04964 1.03947 1.19999 0.99259 0.90491 1.02617 1.21526 0.92569 0.99908 0.95835 1.20882 0.95650 0.95279 1.02700 1.19702 0.92461 0.88402 1.03312 1.20405 0.93178 0.94947 1.18293 1.19735 0.93009 0.95277 0.97434 1.18910 0.94518 0.94153 0.92181 1.21734 1.16405 1.26396 0.93246 0.91709 1.26010 1.00026 0.98700 0.95133 1.70132 1.43416 1.45775 0.98422 0.85422 0.78829 0.78908 0.77734 1.19625 1.20994 1.18505 1.23975 0.96375 0.93920 0.96388 1.77641 0.97788 1.08592 1.33819 1.46327 1.06254 1.05550 1.46703 1.21900 0.78366 1.02216 1.02451 0.89719 0.89007 0.89710 0.80786 0.83695 0.91651 0.92367 0.99760 0.99934 0.92907 0.77677 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.00 71.24 0.71 -0.26 16 2 C -0.12 -2.41 5.84 -20.08 -0.12 -2.52 16 3 C -0.08 -1.71 9.74 22.31 0.22 -1.49 16 4 C -0.13 -3.97 10.09 22.39 0.23 -3.74 16 5 C 0.08 3.06 6.76 39.11 0.26 3.33 16 6 C -0.26 -10.68 5.44 -19.62 -0.11 -10.79 16 7 C -0.02 -0.71 5.64 29.85 0.17 -0.54 16 8 C 0.04 2.20 4.96 29.85 0.15 2.35 16 9 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 10 H 0.06 3.56 7.74 -2.91 -0.02 3.53 16 11 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 12 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 13 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 17 C 0.07 2.59 11.87 84.82 1.01 3.59 16 18 N -0.35 -13.49 12.66 -57.54 -0.73 -14.22 16 19 N -0.28 -9.93 3.90 -187.78 -0.73 -10.67 16 20 C 0.07 1.90 10.80 83.20 0.90 2.80 16 21 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 22 H 0.09 0.66 8.09 -2.39 -0.02 0.64 16 23 H 0.08 0.64 8.07 -2.39 -0.02 0.62 16 24 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 25 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.21 6.61 8.06 -2.91 -0.02 6.59 16 32 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -74.49 281.55 6.06 -68.42 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.10 Total: 6.09 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 4.11 Total: -38.02 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.18 Total: -83.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.49 6.06 -68.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.197 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds