Wall clock time and date at job start Mon Mar 30 2020 03:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30903 * 125.31298 * 2 1 4 4 C 1.33406 * 109.86728 * 179.97438 * 3 2 1 5 5 C 1.37992 * 107.46142 * 359.97438 * 4 3 2 6 6 C 1.40971 * 133.70930 * 180.02562 * 5 4 3 7 7 C 1.35878 * 119.17573 * 180.02562 * 6 5 4 8 8 C 1.40809 * 119.77356 * 359.97438 * 7 6 5 9 9 C 1.34673 * 120.61840 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.71990 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47172 * 273.55852 * 10 9 8 12 12 C 1.50703 * 109.47172 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99750 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00170 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99589 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99952 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47138 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46901 * 120.00517 * 16 14 12 19 19 H 1.48503 * 109.47097 * 240.00344 * 16 14 12 20 20 N 1.35038 * 125.31039 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47172 * 263.86174 * 1 2 3 22 22 H 1.09000 * 109.47193 * 23.85696 * 1 2 3 23 23 H 1.09003 * 109.47116 * 143.86016 * 1 2 3 24 24 H 1.07994 * 126.26620 * 179.97438 * 4 3 2 25 25 H 1.07993 * 120.41074 * 0.02562 * 6 5 4 26 26 H 1.08004 * 120.11296 * 180.28068 * 7 6 5 27 27 H 1.08004 * 119.69569 * 179.97438 * 8 7 6 28 28 H 1.08997 * 109.47440 * 33.56331 * 10 9 8 29 29 H 1.09006 * 109.47036 * 153.56433 * 10 9 8 30 30 H 1.08997 * 109.47329 * 300.00546 * 11 10 9 31 31 H 1.09006 * 109.46666 * 60.00354 * 11 10 9 32 32 H 0.97007 * 119.99701 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7129 0.0006 5 6 3.5981 -0.6662 0.0015 6 6 4.6508 -1.6039 0.0029 7 6 4.3562 -2.9303 0.0030 8 6 3.0115 -3.3480 0.0024 9 6 2.0127 -2.4447 0.0021 10 6 0.5807 -2.9142 0.0020 11 6 0.1241 -3.1584 -1.4377 12 6 -1.3077 -3.6286 -1.4378 13 1 -1.8390 -3.7415 -0.5043 14 6 -1.9397 -3.9136 -2.6296 15 7 -1.2928 -3.7756 -3.7662 16 14 -3.7146 -4.4957 -2.6296 17 1 -4.2122 -4.5670 -1.2322 18 1 -4.5485 -3.5412 -3.4035 19 1 -3.7943 -5.8410 -3.2532 20 7 2.2875 -1.1020 0.0005 21 1 -0.3634 -0.1099 1.0218 22 1 -0.3633 0.9399 -0.4156 23 1 -0.3633 -0.8299 -0.6061 24 1 4.3972 1.3820 0.0003 25 1 5.6784 -1.2720 0.0038 26 1 5.1508 -3.6618 0.0087 27 1 2.7789 -4.4027 0.0021 28 1 0.5021 -3.8410 0.5703 29 1 -0.0513 -2.1529 0.4594 30 1 0.2027 -2.2317 -2.0060 31 1 0.7562 -3.9198 -1.8951 32 1 -1.7373 -3.9765 -4.6047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261221607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:23 Heat of formation + Delta-G solvation = 68.576451 kcal Electronic energy + Delta-G solvation = -15569.167982 eV Core-core repulsion = 13109.310909 eV Total energy + Delta-G solvation = -2459.857073 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.50306 -37.41322 -34.81687 -32.97666 -31.52536 -30.44704 -29.36028 -26.37813 -24.87552 -23.00938 -22.10314 -21.33203 -19.71306 -16.89398 -16.64036 -15.96713 -15.63127 -15.26839 -14.61228 -14.49672 -13.57497 -13.17763 -12.88380 -12.77242 -12.44336 -12.02243 -11.75824 -11.62293 -11.33280 -11.05482 -10.87900 -10.64762 -10.33532 -10.10543 -9.92508 -9.70882 -9.27402 -8.77013 -8.49119 -6.99424 -6.12858 -4.18125 1.16233 1.60652 2.96227 3.23972 3.32225 3.34965 3.37691 3.73906 4.34903 4.77659 4.81423 5.01445 5.08135 5.23129 5.28421 5.32592 5.67809 5.87858 5.92172 5.94083 6.07099 6.14637 6.27115 6.39282 6.48556 6.51059 6.64206 6.90709 6.99645 7.46995 7.50110 7.61738 7.83493 8.20244 8.24737 8.88280 9.47664 10.97806 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034363 B = 0.007107 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.623570 B = 3938.899351 C = 4413.827414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.175 3.825 3 N -0.459 5.459 4 C -0.035 4.035 5 C -0.002 4.002 6 C -0.102 4.102 7 C -0.109 4.109 8 C -0.158 4.158 9 C 0.117 3.883 10 C -0.093 4.093 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.357 5.357 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.175 0.825 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.019 0.981 31 H 0.022 0.978 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 2.626 7.764 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 N -0.174 5.174 4 C -0.189 4.189 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.130 4.130 8 C -0.179 4.179 9 C 0.015 3.985 10 C -0.130 4.130 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.028 5.028 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.122 0.878 24 H 0.192 0.808 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.082 3.428 7.573 11.594 hybrid contribution -0.417 -1.184 -0.240 1.278 sum 7.665 2.245 7.334 10.843 Atomic orbital electron populations 1.20574 0.84360 1.05596 1.03437 1.23201 0.95822 0.79380 1.09623 1.69937 1.02475 1.27735 1.17249 1.22389 0.94583 0.90398 1.11560 1.19691 0.84205 0.95469 1.11712 1.20330 0.97303 0.91753 1.02739 1.21011 0.96368 0.95634 1.00018 1.20584 0.91448 0.99859 1.05997 1.20956 0.99367 0.80121 0.98078 1.21321 0.86832 1.01435 1.03458 1.19134 0.96496 0.97467 0.87548 1.21171 0.96898 1.45650 0.92819 0.92241 1.25018 0.98245 0.95364 0.95560 1.69977 1.36926 1.48376 0.97589 0.86507 0.84682 0.78452 0.78216 1.19603 1.20884 1.20932 1.42781 1.07815 1.05965 1.46210 0.90751 0.89565 0.87801 0.80781 0.84337 0.85117 0.83720 0.89959 0.90349 0.96321 0.95950 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 8.71 36.01 0.31 -1.06 16 2 C 0.18 3.33 7.93 -155.08 -1.23 2.10 16 3 N -0.46 -8.72 11.19 -10.11 -0.11 -8.83 16 4 C -0.04 -0.59 12.02 -16.96 -0.20 -0.79 16 5 C 0.00 -0.04 6.80 -84.09 -0.57 -0.61 16 6 C -0.10 -1.42 10.11 -39.39 -0.40 -1.82 16 7 C -0.11 -1.50 10.07 -39.46 -0.40 -1.89 16 8 C -0.16 -2.52 9.59 -39.87 -0.38 -2.90 16 9 C 0.12 2.14 6.04 -81.52 -0.49 1.64 16 10 C -0.09 -1.79 4.59 -27.88 -0.13 -1.92 16 11 C 0.03 0.74 4.38 -27.88 -0.12 0.62 16 12 C -0.53 -13.92 9.11 -34.44 -0.31 -14.24 16 13 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 16 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 N -0.36 -6.71 2.94 -53.99 -0.16 -6.87 16 21 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 23 H 0.10 1.96 4.79 -51.93 -0.25 1.71 16 24 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 28 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 29 H 0.08 1.45 5.03 -51.93 -0.26 1.19 16 30 H 0.02 0.49 7.35 -51.93 -0.38 0.11 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -30.87 270.95 -8.30 -39.18 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.81 Total: 1.17 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -4.02 Total: -19.32 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.46 Total: -40.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.87 -8.30 -39.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.754 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds