Wall clock time and date at job start Mon Mar 30 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30903 * 125.31298 * 2 1 4 4 C 1.33406 * 109.86728 * 179.97438 * 3 2 1 5 5 C 1.37992 * 107.46142 * 359.97438 * 4 3 2 6 6 C 1.40971 * 133.70930 * 180.02562 * 5 4 3 7 7 C 1.35878 * 119.17573 * 180.02562 * 6 5 4 8 8 C 1.40809 * 119.77356 * 359.97438 * 7 6 5 9 9 C 1.34673 * 120.61840 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.71990 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47172 * 273.55852 * 10 9 8 12 12 C 1.50703 * 109.47172 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99750 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00170 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99589 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99952 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47138 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46901 * 120.00517 * 16 14 12 19 19 H 1.48503 * 109.47097 * 240.00344 * 16 14 12 20 20 N 1.35038 * 125.31039 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47172 * 263.86174 * 1 2 3 22 22 H 1.09000 * 109.47193 * 23.85696 * 1 2 3 23 23 H 1.09003 * 109.47116 * 143.86016 * 1 2 3 24 24 H 1.07994 * 126.26620 * 179.97438 * 4 3 2 25 25 H 1.07993 * 120.41074 * 0.02562 * 6 5 4 26 26 H 1.08004 * 120.11296 * 180.28068 * 7 6 5 27 27 H 1.08004 * 119.69569 * 179.97438 * 8 7 6 28 28 H 1.08997 * 109.47440 * 33.56331 * 10 9 8 29 29 H 1.09006 * 109.47036 * 153.56433 * 10 9 8 30 30 H 1.08997 * 109.47329 * 300.00546 * 11 10 9 31 31 H 1.09006 * 109.46666 * 60.00354 * 11 10 9 32 32 H 0.97007 * 119.99701 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7129 0.0006 5 6 3.5981 -0.6662 0.0015 6 6 4.6508 -1.6039 0.0029 7 6 4.3562 -2.9303 0.0030 8 6 3.0115 -3.3480 0.0024 9 6 2.0127 -2.4447 0.0021 10 6 0.5807 -2.9142 0.0020 11 6 0.1241 -3.1584 -1.4377 12 6 -1.3077 -3.6286 -1.4378 13 1 -1.8390 -3.7415 -0.5043 14 6 -1.9397 -3.9136 -2.6296 15 7 -1.2928 -3.7756 -3.7662 16 14 -3.7146 -4.4957 -2.6296 17 1 -4.2122 -4.5670 -1.2322 18 1 -4.5485 -3.5412 -3.4035 19 1 -3.7943 -5.8410 -3.2532 20 7 2.2875 -1.1020 0.0005 21 1 -0.3634 -0.1099 1.0218 22 1 -0.3633 0.9399 -0.4156 23 1 -0.3633 -0.8299 -0.6061 24 1 4.3972 1.3820 0.0003 25 1 5.6784 -1.2720 0.0038 26 1 5.1508 -3.6618 0.0087 27 1 2.7789 -4.4027 0.0021 28 1 0.5021 -3.8410 0.5703 29 1 -0.0513 -2.1529 0.4594 30 1 0.2027 -2.2317 -2.0060 31 1 0.7562 -3.9198 -1.8951 32 1 -1.7373 -3.9765 -4.6047 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261221607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:22 Heat of formation + Delta-G solvation = 51.868562 kcal Electronic energy + Delta-G solvation = -15569.892491 eV Core-core repulsion = 13109.310909 eV Total energy + Delta-G solvation = -2460.581581 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.80044 -38.71457 -36.35890 -34.72899 -33.04154 -31.85997 -30.80214 -27.98539 -26.39495 -24.48522 -23.37692 -22.99444 -21.09802 -18.61865 -18.15502 -17.31864 -17.03856 -16.50193 -16.37973 -15.95342 -15.04047 -14.67996 -14.38585 -14.15065 -13.96938 -13.49842 -13.24173 -13.04340 -12.93451 -12.73433 -12.40012 -12.29190 -11.80173 -11.75857 -11.40769 -11.31330 -11.21400 -10.60088 -10.09993 -8.29612 -8.19322 -6.34671 -0.05666 0.33939 1.40829 1.42205 1.54527 1.68003 2.02541 2.39531 2.53880 3.12114 3.49990 3.52469 3.77340 3.91936 4.01998 4.24058 4.43078 4.53396 4.57530 4.62120 4.65961 4.79461 4.92858 5.00542 5.08215 5.25173 5.34164 5.45296 5.51492 5.67364 5.78018 5.81373 6.14781 6.25413 6.81677 6.91818 7.35945 8.89297 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034363 B = 0.007107 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.623570 B = 3938.899351 C = 4413.827414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.141 3.859 3 N -0.481 5.481 4 C -0.041 4.041 5 C -0.021 4.021 6 C -0.091 4.091 7 C -0.113 4.113 8 C -0.144 4.144 9 C 0.072 3.928 10 C -0.077 4.077 11 C 0.044 3.956 12 C -0.538 4.538 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.282 1.282 19 H -0.280 1.280 20 N -0.363 5.363 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.209 0.791 25 H 0.181 0.819 26 H 0.174 0.826 27 H 0.160 0.840 28 H 0.095 0.905 29 H 0.081 0.919 30 H -0.017 1.017 31 H -0.004 1.004 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 1.971 8.938 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 N -0.196 5.196 4 C -0.196 4.196 5 C -0.129 4.129 6 C -0.110 4.110 7 C -0.134 4.134 8 C -0.164 4.164 9 C -0.029 4.029 10 C -0.115 4.115 11 C 0.006 3.994 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.181 1.181 18 H -0.208 1.208 19 H -0.205 1.205 20 N -0.034 5.034 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.096 0.904 24 H 0.225 0.775 25 H 0.198 0.802 26 H 0.191 0.809 27 H 0.177 0.823 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.002 0.998 31 H 0.014 0.986 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.242 2.765 8.769 13.037 hybrid contribution -0.634 -0.979 -0.604 1.313 sum 8.608 1.787 8.165 11.998 Atomic orbital electron populations 1.20492 0.83946 1.04767 1.04026 1.23461 0.96529 0.79903 1.11467 1.69907 1.03655 1.28099 1.17954 1.23034 0.94721 0.91071 1.10741 1.20352 0.84427 0.96350 1.11810 1.20907 0.98396 0.91349 1.00393 1.21463 0.96162 0.96568 0.99165 1.21043 0.92343 1.00258 1.02794 1.20872 0.99193 0.80609 1.02263 1.20995 0.88272 1.02250 0.99967 1.18879 0.95476 0.94620 0.90385 1.21626 0.98018 1.44759 0.93191 0.91267 1.25948 1.02800 0.95575 0.95201 1.70118 1.38954 1.49922 0.98305 0.85411 0.79158 0.77763 0.78815 1.18086 1.20790 1.20548 1.42883 1.08578 1.05986 1.45995 0.88968 0.88920 0.90378 0.77464 0.80161 0.80905 0.82258 0.88631 0.90066 0.99841 0.98569 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.60 8.71 71.24 0.62 -1.98 16 2 C 0.14 5.46 7.93 138.01 1.09 6.55 16 3 N -0.48 -18.25 11.19 -185.91 -2.08 -20.33 16 4 C -0.04 -1.33 12.02 84.40 1.01 -0.32 16 5 C -0.02 -0.67 6.80 38.77 0.26 -0.41 16 6 C -0.09 -2.23 10.11 22.39 0.23 -2.01 16 7 C -0.11 -2.68 10.07 22.35 0.23 -2.45 16 8 C -0.14 -4.31 9.59 22.08 0.21 -4.10 16 9 C 0.07 2.62 6.04 40.93 0.25 2.87 16 10 C -0.08 -3.02 4.59 29.85 0.14 -2.89 16 11 C 0.04 2.20 4.38 29.85 0.13 2.33 16 12 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 16 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 17 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 N -0.36 -13.65 2.94 -324.74 -0.96 -14.60 16 21 H 0.09 2.76 8.02 -2.38 -0.02 2.74 16 22 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 23 H 0.08 3.12 4.79 -2.39 -0.01 3.11 16 24 H 0.21 4.87 8.06 -2.91 -0.02 4.85 16 25 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 26 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 27 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.10 3.39 8.09 -2.39 -0.02 3.37 16 29 H 0.08 3.08 5.03 -2.38 -0.01 3.07 16 30 H -0.02 -0.95 7.35 -2.39 -0.02 -0.97 16 31 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 32 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -68.47 270.95 5.26 -63.21 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.12 Total: 12.80 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.87 Total: -30.43 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.75 Total: -90.39 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.47 5.26 -63.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.083 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds