Wall clock time and date at job start Mon Mar 30 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38542 * 125.50077 * 2 1 4 4 C 1.38927 * 107.57035 * 179.97438 * 3 2 1 5 5 C 1.40795 * 132.96402 * 180.02562 * 4 3 2 6 6 C 1.36065 * 119.22501 * 179.97438 * 5 4 3 7 7 C 1.50703 * 120.20454 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46988 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46755 * 239.99694 * 7 6 5 10 10 C 1.50699 * 109.47531 * 119.99830 * 7 6 5 11 11 H 1.08000 * 119.99505 * 5.36754 * 10 7 6 12 12 C 1.37874 * 120.00215 * 185.37068 * 10 7 6 13 13 N 1.31510 * 120.00193 * 185.16460 * 12 10 7 14 14 Si 1.86801 * 120.00105 * 5.17082 * 12 10 7 15 15 H 1.48505 * 109.46697 * 269.99870 * 14 12 10 16 16 H 1.48504 * 109.47062 * 29.99499 * 14 12 10 17 17 H 1.48492 * 109.47361 * 149.99737 * 14 12 10 18 18 C 1.40470 * 119.59330 * 0.25060 * 6 5 4 19 19 C 1.34936 * 120.42769 * 359.48403 * 18 6 5 20 20 N 1.36543 * 120.65936 * 0.52075 * 19 18 6 21 21 N 1.31489 * 125.49243 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47315 * 90.00119 * 1 2 3 23 23 H 1.09008 * 109.47418 * 210.00473 * 1 2 3 24 24 H 1.09005 * 109.47324 * 330.00601 * 1 2 3 25 25 H 1.07999 * 126.21096 * 359.96865 * 3 2 1 26 26 H 1.07996 * 120.38937 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.46997 * 294.94953 * 9 7 6 28 28 H 1.08994 * 109.47416 * 54.95298 * 9 7 6 29 29 H 1.09006 * 109.47084 * 174.95137 * 9 7 6 30 30 H 0.97004 * 119.99736 * 355.00028 * 13 12 10 31 31 H 1.07999 * 119.79017 * 179.72609 * 18 6 5 32 32 H 1.08001 * 119.67432 * 180.25986 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1279 0.0000 4 6 3.6333 0.7002 0.0006 5 6 4.8634 1.3850 0.0013 6 6 6.0215 0.6707 0.0023 7 6 7.3505 1.3811 0.0025 8 1 7.1865 2.4587 0.0013 9 6 8.1409 0.9846 -1.2461 10 6 8.1279 0.9922 1.2336 11 1 7.7409 0.2354 1.8998 12 6 9.3330 1.6026 1.5093 13 7 10.0599 1.1935 2.5261 14 14 9.9333 3.0109 0.4388 15 1 10.7463 2.4702 -0.6801 16 1 8.7666 3.7488 -0.1085 17 1 10.7642 3.9330 1.2540 18 6 5.9706 -0.7331 -0.0027 19 6 4.7831 -1.3739 0.0019 20 7 3.6126 -0.6709 0.0009 21 7 2.2704 -1.0706 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8901 0.5138 25 1 1.9726 2.1533 -0.0005 26 1 4.8876 2.4647 0.0011 27 1 8.3824 -0.0774 -1.2012 28 1 7.5412 1.1835 -2.1342 29 1 9.0624 1.5651 -1.2925 30 1 9.7162 0.5123 3.1250 31 1 6.8878 -1.3033 -0.0065 32 1 4.7582 -2.4536 0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:39 Heat of formation + Delta-G solvation = 86.615048 kcal Electronic energy + Delta-G solvation = -15315.036927 eV Core-core repulsion = 12855.962067 eV Total energy + Delta-G solvation = -2459.074861 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.58493 -37.60737 -34.61658 -32.49949 -31.43978 -30.73657 -28.08682 -27.28756 -24.85659 -23.03918 -22.39520 -20.14535 -19.62614 -17.68660 -16.84565 -15.71183 -15.31658 -15.24471 -14.24081 -13.90829 -13.44612 -13.28938 -13.09247 -12.71488 -12.58367 -12.22396 -12.16809 -11.61325 -11.38930 -10.84500 -10.68191 -10.51612 -10.31070 -9.93825 -9.88008 -9.80652 -8.86567 -8.61288 -8.54771 -7.15788 -6.52274 -4.21743 1.27667 1.58187 2.62501 2.96402 3.30456 3.37114 3.52001 3.91181 4.39265 4.53805 4.89171 5.12507 5.21206 5.32866 5.41536 5.56946 5.63768 5.66383 5.78965 5.97385 6.09568 6.13460 6.29451 6.30783 6.49875 6.56850 6.80458 6.86311 6.92678 7.00454 7.27259 7.37271 7.87677 7.95346 8.25974 8.75963 9.48907 10.86020 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049268 B = 0.006235 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.182152 B = 4489.800730 C = 4629.456234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.095 3.905 3 C -0.313 4.313 4 C 0.126 3.874 5 C -0.153 4.153 6 C 0.017 3.983 7 C 0.037 3.963 8 H 0.042 0.958 9 C -0.144 4.144 10 C -0.589 4.589 11 H 0.059 0.941 12 C 0.031 3.969 13 N -0.909 5.909 14 Si 1.055 2.945 15 H -0.283 1.283 16 H -0.278 1.278 17 H -0.290 1.290 18 C -0.131 4.131 19 C 0.087 3.913 20 N -0.275 5.275 21 N -0.342 5.342 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.053 0.947 28 H 0.030 0.970 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.156 0.844 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 -0.768 -6.847 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.342 4.342 4 C 0.007 3.993 5 C -0.172 4.172 6 C 0.012 3.988 7 C 0.018 3.982 8 H 0.060 0.940 9 C -0.201 4.201 10 C -0.627 4.627 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.543 5.543 14 Si 0.885 3.115 15 H -0.210 1.210 16 H -0.204 1.204 17 H -0.216 1.216 18 C -0.153 4.153 19 C -0.037 4.037 20 N -0.042 5.042 21 N -0.168 5.168 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.164 0.836 26 H 0.159 0.841 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.900 -1.078 -7.070 13.037 hybrid contribution -1.145 -0.280 0.397 1.243 sum -12.045 -1.358 -6.673 13.837 Atomic orbital electron populations 1.20170 0.86704 1.03152 1.02799 1.22068 0.96692 0.90802 0.96597 1.20995 0.89362 0.99368 1.24462 1.19679 0.95934 0.83752 0.99947 1.20484 0.88568 1.00529 1.07661 1.20365 0.96599 0.93091 0.88763 1.18454 0.88212 0.95652 0.95870 0.94013 1.22118 0.99456 1.01623 0.96905 1.21956 1.07300 1.25372 1.08076 0.92231 1.25790 0.93187 0.99940 0.98509 1.70816 1.37558 1.30335 1.15576 0.83838 0.76181 0.76208 0.75272 1.20956 1.20409 1.21635 1.20934 0.96368 0.95432 1.02538 1.21416 0.81717 0.98133 1.02469 1.46067 1.05438 1.05660 1.46995 1.77682 0.83254 1.21642 1.34242 0.90569 0.91058 0.90397 0.83560 0.84139 0.92793 0.95138 0.93367 0.92166 0.82652 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.43 36.00 0.38 -0.38 16 2 C 0.09 1.51 7.15 -82.63 -0.59 0.92 16 3 C -0.31 -5.19 10.83 -39.21 -0.42 -5.61 16 4 C 0.13 2.36 6.81 -84.28 -0.57 1.78 16 5 C -0.15 -2.86 9.73 -39.40 -0.38 -3.24 16 6 C 0.02 0.34 4.73 -104.56 -0.49 -0.16 16 7 C 0.04 0.82 2.06 -92.92 -0.19 0.62 16 8 H 0.04 0.93 6.38 -51.93 -0.33 0.60 16 9 C -0.14 -2.85 8.53 37.16 0.32 -2.53 16 10 C -0.59 -15.43 8.64 -34.44 -0.30 -15.73 16 11 H 0.06 1.69 7.78 -52.49 -0.41 1.28 16 12 C 0.03 0.84 5.43 -17.82 -0.10 0.74 16 13 N -0.91 -26.93 13.70 55.43 0.76 -26.17 16 14 Si 1.06 24.20 25.29 -169.99 -4.30 19.91 16 15 H -0.28 -6.14 6.81 56.52 0.38 -5.75 16 16 H -0.28 -5.88 6.36 56.52 0.36 -5.52 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 C -0.13 -2.35 8.71 -39.91 -0.35 -2.70 16 19 C 0.09 1.47 11.19 -16.63 -0.19 1.28 16 20 N -0.28 -5.15 3.90 -10.71 -0.04 -5.20 16 21 N -0.34 -6.26 12.66 33.51 0.42 -5.84 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.14 2.38 7.94 -52.49 -0.42 1.96 16 27 H 0.05 1.03 7.60 -51.93 -0.39 0.64 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.97 4.40 -51.93 -0.23 0.75 16 30 H 0.27 7.94 8.72 -40.82 -0.36 7.58 16 31 H 0.16 2.65 7.67 -52.49 -0.40 2.24 16 32 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 269.22 15.07 4.06 4.06 Total: -1.00 -30.56 269.22 -5.92 -36.48 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.93 Total: 1.76 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -2.89 Total: -25.00 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.14 Total: -37.20 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.30 Total: 19.91 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.56 -5.92 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.096 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds