Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38549 * 125.49668 * 2 1 4 4 C 1.38923 * 107.56666 * 180.02562 * 3 2 1 5 5 C 1.40804 * 132.96381 * 180.34219 * 4 3 2 6 6 C 1.36068 * 119.22014 * 180.18292 * 5 4 3 7 7 C 1.50701 * 120.19980 * 179.73685 * 6 5 4 8 8 H 1.08998 * 109.47477 * 359.72336 * 7 6 5 9 9 C 1.53001 * 109.47098 * 119.72484 * 7 6 5 10 10 C 1.50694 * 109.47169 * 239.72186 * 7 6 5 11 11 H 1.08002 * 120.00179 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00472 * 180.02562 * 10 7 6 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 10 7 15 15 H 1.48490 * 109.47339 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 300.00306 * 14 12 10 17 17 H 1.48504 * 109.46636 * 59.99865 * 14 12 10 18 18 C 1.40466 * 119.59721 * 359.45952 * 6 5 4 19 19 C 1.34937 * 120.42817 * 0.25815 * 18 6 5 20 20 N 1.36539 * 120.66161 * 0.02562 * 19 18 6 21 21 N 1.31486 * 125.49693 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46900 * 90.00528 * 1 2 3 23 23 H 1.09003 * 109.47091 * 210.00106 * 1 2 3 24 24 H 1.08999 * 109.47037 * 330.00233 * 1 2 3 25 25 H 1.08004 * 126.21160 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.39181 * 359.93492 * 5 4 3 27 27 H 1.09000 * 109.47809 * 59.99661 * 9 7 6 28 28 H 1.09000 * 109.47703 * 180.02562 * 9 7 6 29 29 H 1.09007 * 109.47140 * 300.00103 * 9 7 6 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08000 * 119.78908 * 180.27850 * 18 6 5 32 32 H 1.08003 * 119.67391 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1280 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3852 0.0053 6 6 6.0215 0.6708 -0.0010 7 6 7.3506 1.3812 -0.0009 8 1 7.1866 2.4588 -0.0003 9 6 8.1406 0.9849 1.2479 10 6 8.1282 0.9922 -1.2317 11 1 7.7028 0.2995 -1.9427 12 6 9.3833 1.5199 -1.4497 13 7 9.9015 2.3631 -0.5836 14 14 10.3476 1.0371 -2.9750 15 1 11.6570 1.7372 -2.9749 16 1 10.5706 -0.4310 -2.9755 17 1 9.5811 1.4218 -4.1873 18 6 5.9707 -0.7330 -0.0018 19 6 4.7832 -1.3738 -0.0015 20 7 3.6126 -0.6709 -0.0010 21 7 2.2705 -1.0705 -0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9725 2.1535 -0.0004 26 1 4.8877 2.4649 0.0107 27 1 8.3047 -0.0927 1.2474 28 1 9.1018 1.4990 1.2483 29 1 7.5781 1.2662 2.1383 30 1 10.7846 2.7340 -0.7367 31 1 6.8879 -1.3031 -0.0022 32 1 4.7583 -2.4535 -0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261224336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = 86.052366 kcal Electronic energy + Delta-G solvation = -15263.511505 eV Core-core repulsion = 12804.412244 eV Total energy + Delta-G solvation = -2459.099260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.49096 -37.45497 -34.47897 -32.44566 -31.31481 -30.25686 -27.77765 -27.20063 -25.24994 -22.92648 -22.35763 -20.07697 -19.75016 -17.00734 -16.35397 -15.48869 -15.21666 -15.16507 -14.42630 -13.98906 -13.36492 -13.20140 -12.77448 -12.73319 -12.27899 -12.05208 -11.61925 -11.34427 -11.19554 -10.97443 -10.66922 -10.38473 -10.27207 -10.21124 -9.81445 -9.66536 -9.11631 -8.50849 -8.46587 -7.04711 -6.12396 -4.20756 1.38158 1.68223 2.71167 3.04019 3.25204 3.30487 3.33101 4.01848 4.35105 4.61652 4.98848 5.18908 5.22810 5.42588 5.53604 5.62198 5.75007 5.78147 5.85064 6.09475 6.20851 6.28208 6.61147 6.68705 6.81770 6.94468 7.00611 7.08192 7.16300 7.38459 7.57579 7.78183 7.95023 8.03399 8.22627 8.81020 9.44885 10.93023 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046434 B = 0.005966 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.858212 B = 4692.007620 C = 4774.756977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.094 3.906 3 C -0.315 4.315 4 C 0.128 3.872 5 C -0.154 4.154 6 C 0.011 3.989 7 C 0.071 3.929 8 H 0.041 0.959 9 C -0.133 4.133 10 C -0.514 4.514 11 H 0.058 0.942 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.895 3.105 15 H -0.286 1.286 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.130 4.130 19 C 0.083 3.917 20 N -0.276 5.276 21 N -0.345 5.345 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.010 0.990 30 H 0.263 0.737 31 H 0.156 0.844 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -3.388 1.984 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.345 4.345 4 C 0.008 3.992 5 C -0.174 4.174 6 C 0.006 3.994 7 C 0.053 3.947 8 H 0.059 0.941 9 C -0.191 4.191 10 C -0.552 4.552 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.525 5.525 14 Si 0.723 3.277 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.152 4.152 19 C -0.041 4.041 20 N -0.042 5.042 21 N -0.171 5.171 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.164 0.836 26 H 0.158 0.842 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.174 0.826 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.415 -4.608 2.019 11.567 hybrid contribution 0.689 0.627 -0.896 1.292 sum -9.727 -3.981 1.124 10.570 Atomic orbital electron populations 1.20161 0.86808 1.03029 1.02780 1.22047 0.96627 0.90851 0.96715 1.20985 0.89433 0.99307 1.24738 1.19713 0.95969 0.83725 0.99768 1.20519 0.88534 1.00562 1.07758 1.20762 0.97515 0.93114 0.88055 1.17963 0.86020 0.95375 0.95367 0.94065 1.21792 1.02726 0.99691 0.94881 1.20975 1.00891 1.27647 1.05699 0.92390 1.24936 0.97421 0.94752 0.96558 1.69865 1.17200 1.30204 1.35245 0.86603 0.79122 0.78732 0.83281 1.21182 1.20155 1.20209 1.20974 0.96262 0.95590 1.02333 1.21416 0.81779 0.98055 1.02866 1.46052 1.05395 1.05684 1.47036 1.77657 0.83319 1.21650 1.34460 0.90609 0.91136 0.90462 0.83647 0.84187 0.95061 0.89264 0.97045 0.92687 0.82630 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.43 36.01 0.38 -0.39 16 2 C 0.09 1.53 7.15 -82.62 -0.59 0.94 16 3 C -0.32 -5.38 10.83 -39.21 -0.42 -5.81 16 4 C 0.13 2.44 6.81 -84.27 -0.57 1.87 16 5 C -0.15 -2.98 9.73 -39.39 -0.38 -3.37 16 6 C 0.01 0.22 4.72 -104.56 -0.49 -0.28 16 7 C 0.07 1.66 2.48 -92.93 -0.23 1.43 16 8 H 0.04 1.03 7.87 -51.93 -0.41 0.62 16 9 C -0.13 -2.98 8.79 37.16 0.33 -2.65 16 10 C -0.51 -13.14 8.26 -34.44 -0.28 -13.43 16 11 H 0.06 1.48 7.61 -52.49 -0.40 1.08 16 12 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -23.94 11.32 55.43 0.63 -23.31 16 14 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.13 -2.36 8.70 -39.91 -0.35 -2.70 16 19 C 0.08 1.42 11.19 -16.63 -0.19 1.23 16 20 N -0.28 -5.24 3.90 -10.70 -0.04 -5.28 16 21 N -0.34 -6.41 12.66 33.52 0.42 -5.99 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 26 H 0.14 2.51 7.94 -52.49 -0.42 2.10 16 27 H 0.03 0.65 7.43 -51.93 -0.39 0.26 16 28 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.16 2.64 7.62 -52.49 -0.40 2.24 16 32 H 0.16 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 274.67 15.07 4.14 4.14 Total: -1.00 -28.86 274.67 -6.78 -35.64 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.00 Total: 1.04 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.91 Total: -21.55 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 1.01 Total: -34.58 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.86 -6.78 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261224336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.691 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds