Wall clock time and date at job start Mon Mar 30 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38541 * 125.49834 * 2 1 4 4 C 1.38929 * 107.57350 * 180.02562 * 3 2 1 5 5 C 1.40797 * 132.96973 * 180.02562 * 4 3 2 6 6 C 1.36070 * 119.22788 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.58540 * 359.75800 * 6 5 4 8 8 C 1.34931 * 120.43611 * 0.49866 * 7 6 5 9 9 C 1.50701 * 119.67365 * 179.77611 * 8 7 6 10 10 H 1.08997 * 109.47351 * 154.72361 * 9 8 7 11 11 C 1.53005 * 109.46756 * 274.72377 * 9 8 7 12 12 C 1.50694 * 109.47163 * 34.72095 * 9 8 7 13 13 H 1.08000 * 120.00012 * 356.80584 * 12 9 8 14 14 C 1.37874 * 120.00336 * 176.80500 * 12 9 8 15 15 N 1.31515 * 119.99701 * 352.25115 * 14 12 9 16 16 Si 1.86803 * 120.00375 * 172.24885 * 14 12 9 17 17 H 1.48496 * 109.46937 * 265.13157 * 16 14 12 18 18 H 1.48498 * 109.47043 * 145.13114 * 16 14 12 19 19 H 1.48499 * 109.46856 * 25.13028 * 16 14 12 20 20 N 1.36539 * 120.65708 * 359.49485 * 8 7 6 21 21 N 1.31492 * 125.49892 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46708 * 90.00223 * 1 2 3 23 23 H 1.08997 * 109.46897 * 209.99988 * 1 2 3 24 24 H 1.08995 * 109.47406 * 330.00326 * 1 2 3 25 25 H 1.08003 * 126.21735 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.38671 * 359.97438 * 5 4 3 27 27 H 1.07992 * 120.20150 * 179.97438 * 6 5 4 28 28 H 1.08002 * 119.78019 * 180.26869 * 7 6 5 29 29 H 1.08999 * 109.47030 * 299.73481 * 11 9 8 30 30 H 1.08998 * 109.47195 * 59.73618 * 11 9 8 31 31 H 1.09000 * 109.46810 * 179.73333 * 11 9 8 32 32 H 0.97004 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1279 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3852 -0.0004 6 6 6.0216 0.6709 -0.0006 7 6 5.9706 -0.7329 0.0041 8 6 4.7832 -1.3738 -0.0012 9 6 4.7486 -2.8804 -0.0011 10 1 3.8092 -3.2222 0.4334 11 6 4.8622 -3.3932 -1.4382 12 6 5.9007 -3.4093 0.8135 13 1 6.6187 -2.7252 1.2412 14 6 6.0384 -4.7666 1.0130 15 7 5.0873 -5.5880 0.6251 16 14 7.5757 -5.4389 1.8340 17 1 8.5534 -5.8485 0.7941 18 1 7.2178 -6.6146 2.6676 19 1 8.1779 -4.3879 2.6931 20 7 3.6127 -0.6709 -0.0010 21 7 2.2706 -1.0705 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.9726 2.1534 -0.0004 26 1 4.8877 2.4649 -0.0001 27 1 6.9740 1.1800 -0.0009 28 1 6.8879 -1.3030 0.0084 29 1 4.0263 -3.0144 -2.0263 30 1 5.7995 -3.0475 -1.8743 31 1 4.8419 -4.4830 -1.4377 32 1 5.1843 -6.5429 0.7651 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:43 Heat of formation + Delta-G solvation = 87.606421 kcal Electronic energy + Delta-G solvation = -15600.326590 eV Core-core repulsion = 13141.294718 eV Total energy + Delta-G solvation = -2459.031872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.42252 -37.19887 -34.52793 -32.51269 -31.50007 -29.58687 -28.26567 -26.94659 -25.18254 -23.19858 -21.98324 -20.47539 -19.31667 -16.96119 -16.08669 -15.60555 -15.19992 -15.06172 -14.62635 -13.53472 -13.38492 -13.06147 -12.67222 -12.54794 -12.34567 -11.97982 -11.45150 -11.38713 -11.20805 -10.94001 -10.74643 -10.59306 -10.30792 -10.12092 -9.66960 -9.50837 -9.06207 -8.61707 -8.46557 -6.91693 -6.14954 -4.20717 1.42939 1.76250 2.88921 3.20090 3.24129 3.31810 3.34113 4.02171 4.33376 4.82350 4.99546 5.18724 5.39400 5.46158 5.57641 5.70115 5.77801 5.83665 5.98628 6.12220 6.28660 6.41669 6.63877 6.71842 6.74250 6.88824 6.94688 7.03058 7.16006 7.46313 7.60439 7.77863 7.88822 8.14145 8.26657 8.79908 9.43542 10.93858 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031298 B = 0.008028 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.420907 B = 3486.763204 C = 4066.235334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.087 3.913 3 C -0.313 4.313 4 C 0.109 3.891 5 C -0.162 4.162 6 C -0.064 4.064 7 C -0.186 4.186 8 C 0.195 3.805 9 C 0.074 3.926 10 H 0.059 0.941 11 C -0.123 4.123 12 C -0.523 4.523 13 H 0.067 0.933 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 N -0.265 5.265 21 N -0.312 5.312 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.160 0.840 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 11.254 -1.947 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.342 4.342 4 C -0.010 4.010 5 C -0.182 4.182 6 C -0.087 4.087 7 C -0.207 4.207 8 C 0.088 3.912 9 C 0.055 3.945 10 H 0.077 0.923 11 C -0.181 4.181 12 C -0.562 4.562 13 H 0.085 0.915 14 C -0.136 4.136 15 N -0.519 5.519 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.031 5.031 21 N -0.136 5.136 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.177 0.823 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.161 9.728 -1.949 10.154 hybrid contribution 0.864 0.534 0.463 1.116 sum -1.298 10.262 -1.486 10.450 Atomic orbital electron populations 1.20150 0.86814 1.03073 1.02724 1.22168 0.96838 0.90879 0.97174 1.20952 0.89408 0.99134 1.24752 1.19664 0.95853 0.84323 1.01181 1.20330 0.89523 0.99825 1.08520 1.21228 0.98082 0.94258 0.95160 1.20781 0.97730 0.93627 1.08543 1.21416 0.80867 0.97520 0.91389 1.18028 1.00452 0.80821 0.95178 0.92345 1.21678 0.97464 1.03517 0.95426 1.21122 1.09747 0.92167 1.33129 0.91516 1.24955 0.96412 0.96933 0.95305 1.69970 1.31670 1.03527 1.46727 0.86508 0.83051 0.78745 0.79359 1.20459 1.21138 1.19686 1.46372 1.05757 1.05100 1.45847 1.77895 0.83409 1.21246 1.31096 0.90666 0.90872 0.90652 0.83868 0.84686 0.85064 0.82275 0.96706 0.94756 0.90155 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.43 36.01 0.38 -0.53 16 2 C 0.09 1.60 7.15 -82.63 -0.59 1.01 16 3 C -0.31 -5.49 10.83 -39.21 -0.42 -5.91 16 4 C 0.11 2.11 6.81 -84.27 -0.57 1.53 16 5 C -0.16 -2.61 10.11 -39.39 -0.40 -3.01 16 6 C -0.06 -1.02 10.07 -39.52 -0.40 -1.42 16 7 C -0.19 -3.61 8.80 -39.91 -0.35 -3.96 16 8 C 0.19 4.43 5.83 -81.67 -0.48 3.95 16 9 C 0.07 1.90 2.41 -92.92 -0.22 1.68 16 10 H 0.06 1.70 7.93 -51.93 -0.41 1.29 16 11 C -0.12 -2.98 8.99 37.16 0.33 -2.64 16 12 C -0.52 -13.85 7.87 -34.44 -0.27 -14.12 16 13 H 0.07 1.69 6.21 -52.49 -0.33 1.36 16 14 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 15 N -0.88 -24.91 11.92 55.43 0.66 -24.24 16 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.27 -5.94 3.90 -7.01 -0.03 -5.96 16 21 N -0.31 -7.02 12.33 33.51 0.41 -6.61 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.16 3.01 6.56 -52.49 -0.34 2.66 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 2.09 6.64 -51.93 -0.34 1.75 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 274.06 15.07 4.13 4.13 Total: -1.00 -30.42 274.06 -6.88 -37.30 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.94 Total: 1.56 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -3.09 Total: -21.72 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 1.05 Total: -36.81 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.42 -6.88 -37.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.906 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds