Wall clock time and date at job start Mon Mar 30 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38541 * 125.49834 * 2 1 4 4 C 1.38929 * 107.57350 * 180.02562 * 3 2 1 5 5 C 1.40797 * 132.96973 * 180.02562 * 4 3 2 6 6 C 1.36070 * 119.22788 * 179.97438 * 5 4 3 7 7 C 1.40473 * 119.58540 * 359.75800 * 6 5 4 8 8 C 1.34931 * 120.43611 * 0.49866 * 7 6 5 9 9 C 1.50701 * 119.67365 * 179.77611 * 8 7 6 10 10 H 1.08997 * 109.47351 * 154.72361 * 9 8 7 11 11 C 1.53005 * 109.46756 * 274.72377 * 9 8 7 12 12 C 1.50694 * 109.47163 * 34.72095 * 9 8 7 13 13 H 1.08000 * 120.00012 * 356.80584 * 12 9 8 14 14 C 1.37874 * 120.00336 * 176.80500 * 12 9 8 15 15 N 1.31515 * 119.99701 * 352.25115 * 14 12 9 16 16 Si 1.86803 * 120.00375 * 172.24885 * 14 12 9 17 17 H 1.48496 * 109.46937 * 265.13157 * 16 14 12 18 18 H 1.48498 * 109.47043 * 145.13114 * 16 14 12 19 19 H 1.48499 * 109.46856 * 25.13028 * 16 14 12 20 20 N 1.36539 * 120.65708 * 359.49485 * 8 7 6 21 21 N 1.31492 * 125.49892 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46708 * 90.00223 * 1 2 3 23 23 H 1.08997 * 109.46897 * 209.99988 * 1 2 3 24 24 H 1.08995 * 109.47406 * 330.00326 * 1 2 3 25 25 H 1.08003 * 126.21735 * 359.97438 * 3 2 1 26 26 H 1.07997 * 120.38671 * 359.97438 * 5 4 3 27 27 H 1.07992 * 120.20150 * 179.97438 * 6 5 4 28 28 H 1.08002 * 119.78019 * 180.26869 * 7 6 5 29 29 H 1.08999 * 109.47030 * 299.73481 * 11 9 8 30 30 H 1.08998 * 109.47195 * 59.73618 * 11 9 8 31 31 H 1.09000 * 109.46810 * 179.73333 * 11 9 8 32 32 H 0.97004 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.1279 0.0000 4 6 3.6333 0.7003 -0.0006 5 6 4.8635 1.3852 -0.0004 6 6 6.0216 0.6709 -0.0006 7 6 5.9706 -0.7329 0.0041 8 6 4.7832 -1.3738 -0.0012 9 6 4.7486 -2.8804 -0.0011 10 1 3.8092 -3.2222 0.4334 11 6 4.8622 -3.3932 -1.4382 12 6 5.9007 -3.4093 0.8135 13 1 6.6187 -2.7252 1.2412 14 6 6.0384 -4.7666 1.0130 15 7 5.0873 -5.5880 0.6251 16 14 7.5757 -5.4389 1.8340 17 1 8.5534 -5.8485 0.7941 18 1 7.2178 -6.6146 2.6676 19 1 8.1779 -4.3879 2.6931 20 7 3.6127 -0.6709 -0.0010 21 7 2.2706 -1.0705 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.9726 2.1534 -0.0004 26 1 4.8877 2.4649 -0.0001 27 1 6.9740 1.1800 -0.0009 28 1 6.8879 -1.3030 0.0084 29 1 4.0263 -3.0144 -2.0263 30 1 5.7995 -3.0475 -1.8743 31 1 4.8419 -4.4830 -1.4377 32 1 5.1843 -6.5429 0.7651 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:43 Heat of formation + Delta-G solvation = 69.759521 kcal Electronic energy + Delta-G solvation = -15601.100489 eV Core-core repulsion = 13141.294718 eV Total energy + Delta-G solvation = -2459.805771 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.86132 -38.70058 -36.28251 -34.08528 -33.09671 -31.24082 -29.65770 -28.33782 -27.18982 -24.85383 -23.38899 -22.09394 -20.83509 -18.65208 -17.83131 -17.15029 -16.70205 -16.55110 -16.23508 -15.11623 -14.90671 -14.47636 -14.28473 -13.82544 -13.75805 -13.58544 -13.12107 -12.99615 -12.72397 -12.68105 -12.45170 -12.22122 -12.09675 -11.76362 -11.29412 -11.16712 -10.93241 -10.53690 -10.08225 -8.36251 -8.18811 -6.33143 0.04754 0.33267 1.41278 1.43420 1.47235 1.54921 1.81891 2.40110 2.62388 3.12032 3.45880 3.76055 4.05332 4.17553 4.29562 4.46174 4.49125 4.67787 4.76639 4.79340 4.82399 4.94668 4.99889 5.07612 5.11464 5.28927 5.37077 5.47510 5.59101 5.76441 5.80071 5.86535 6.03791 6.30891 6.74868 6.78322 7.35285 8.89676 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031298 B = 0.008028 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.420907 B = 3486.763204 C = 4066.235334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.078 3.922 3 C -0.307 4.307 4 C 0.083 3.917 5 C -0.143 4.143 6 C -0.064 4.064 7 C -0.173 4.173 8 C 0.144 3.856 9 C 0.081 3.919 10 H 0.003 0.997 11 C -0.109 4.109 12 C -0.533 4.533 13 H 0.077 0.923 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.261 1.261 20 N -0.285 5.285 21 N -0.378 5.378 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.183 0.817 26 H 0.183 0.817 27 H 0.182 0.818 28 H 0.161 0.839 29 H 0.011 0.989 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 14.391 -1.706 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.336 4.336 4 C -0.036 4.036 5 C -0.162 4.162 6 C -0.086 4.086 7 C -0.194 4.194 8 C 0.038 3.962 9 C 0.062 3.938 10 H 0.021 0.979 11 C -0.167 4.167 12 C -0.571 4.571 13 H 0.095 0.905 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.790 3.210 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.185 1.185 20 N -0.051 5.051 21 N -0.204 5.204 22 H 0.110 0.890 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.200 0.800 26 H 0.200 0.800 27 H 0.199 0.801 28 H 0.178 0.822 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.789 12.885 -1.713 13.022 hybrid contribution 0.354 -0.316 0.378 0.607 sum -0.435 12.568 -1.335 12.646 Atomic orbital electron populations 1.20345 0.83566 1.04354 1.04195 1.23020 0.98891 0.90394 0.95581 1.21483 0.88542 1.00517 1.23070 1.20491 0.98057 0.83346 1.01666 1.20960 0.88008 1.01997 1.05250 1.21648 1.00383 0.92307 0.94271 1.21006 0.96283 0.95818 1.06291 1.21082 0.82555 0.96156 0.96443 1.17688 0.97454 0.83826 0.94879 0.97904 1.21497 0.98004 1.01687 0.95523 1.21486 1.09999 0.92620 1.32992 0.90507 1.25867 0.99386 0.97297 0.96031 1.70129 1.33770 1.03703 1.48264 0.85417 0.79159 0.77910 0.78476 1.19403 1.21491 1.18459 1.46377 1.05398 1.06359 1.46941 1.77826 0.84449 1.24157 1.33920 0.88964 0.91597 0.87307 0.80002 0.79989 0.80088 0.82193 0.97005 0.93200 0.92672 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.43 71.24 0.74 -0.90 16 2 C 0.08 2.83 7.15 42.68 0.31 3.13 16 3 C -0.31 -10.03 10.83 22.51 0.24 -9.79 16 4 C 0.08 3.06 6.81 39.11 0.27 3.33 16 5 C -0.14 -4.00 10.11 22.39 0.23 -3.77 16 6 C -0.06 -1.76 10.07 22.31 0.22 -1.54 16 7 C -0.17 -6.50 8.80 22.05 0.19 -6.31 16 8 C 0.14 6.70 5.83 41.07 0.24 6.94 16 9 C 0.08 4.36 2.41 -12.29 -0.03 4.33 16 10 H 0.00 0.18 7.93 -2.39 -0.02 0.16 16 11 C -0.11 -5.59 8.99 71.98 0.65 -4.94 16 12 C -0.53 -29.00 7.87 25.60 0.20 -28.80 16 13 H 0.08 3.91 6.21 -2.91 -0.02 3.89 16 14 C 0.01 0.75 5.22 84.65 0.44 1.19 16 15 N -0.92 -54.38 11.92 21.45 0.26 -54.12 16 16 Si 0.97 42.61 29.54 68.60 2.03 44.63 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 N -0.28 -12.99 3.90 -176.09 -0.69 -13.68 16 21 N -0.38 -17.71 12.33 -47.88 -0.59 -18.30 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.16 5.84 6.56 -2.91 -0.02 5.82 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 3.05 6.64 -2.39 -0.02 3.03 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -71.35 274.06 5.82 -65.53 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.11 Total: 13.07 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.70 Total: -37.13 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.02 Total: -86.10 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.35 5.82 -65.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.287 kcal (2) G-P(sol) polarization free energy of solvation -71.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds