Wall clock time and date at job start Mon Mar 30 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40471 * 119.85152 * 2 1 4 4 C 1.36019 * 119.69409 * 179.97438 * 3 2 1 5 5 C 1.40935 * 119.32928 * 0.02562 * 4 3 2 6 6 N 1.32559 * 132.32813 * 180.35615 * 5 4 3 7 7 C 1.33521 * 109.15766 * 180.12496 * 6 5 4 8 8 C 1.50698 * 125.68420 * 179.82821 * 7 6 5 9 9 C 1.53006 * 109.47184 * 304.68994 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46926 * 60.00512 * 14 12 10 16 16 H 1.48506 * 109.46961 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47227 * 300.00303 * 14 12 10 18 18 C 1.35104 * 108.62339 * 359.56433 * 7 6 5 19 19 N 1.36834 * 107.18073 * 0.26173 * 18 7 6 20 20 C 1.34954 * 119.85256 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47003 * 269.97572 * 1 2 3 22 22 H 1.08996 * 109.46767 * 29.97831 * 1 2 3 23 23 H 1.08999 * 109.46772 * 149.97742 * 1 2 3 24 24 H 1.08002 * 120.15010 * 0.02738 * 3 2 1 25 25 H 1.08006 * 120.33589 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.46665 * 184.69383 * 8 7 6 27 27 H 1.08993 * 109.47304 * 64.68939 * 8 7 6 28 28 H 1.09001 * 109.46801 * 300.00442 * 9 8 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.07998 * 126.40600 * 180.28617 * 18 7 6 32 32 H 1.08005 * 119.68962 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2183 0.0000 4 6 3.5664 1.2146 0.0005 5 6 4.2534 -0.0160 0.0005 6 7 5.5442 -0.3177 0.0070 7 6 5.6838 -1.6456 0.0008 8 6 6.9930 -2.3918 0.0014 9 6 7.8466 -1.9251 -1.1796 10 6 9.1556 -2.6718 -1.1794 11 1 9.3583 -3.4062 -0.4137 12 6 10.0941 -2.4183 -2.1571 13 7 9.8471 -1.5244 -3.0897 14 14 11.7163 -3.3444 -2.1572 15 1 11.4547 -4.8010 -2.2802 16 1 12.5443 -2.8922 -3.3041 17 1 12.4392 -3.0767 -0.8881 18 6 4.4556 -2.2086 -0.0003 19 7 3.5435 -1.1886 -0.0004 20 6 2.1788 -1.1705 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6663 2.1537 0.0004 25 1 4.1145 2.1453 0.0010 26 1 6.8017 -3.4611 -0.0888 27 1 7.5232 -2.1948 0.9331 28 1 7.3165 -2.1221 -2.1114 29 1 8.0379 -0.8558 -1.0895 30 1 10.5074 -1.3458 -3.7773 31 1 4.2351 -3.2658 -0.0005 32 1 1.6313 -2.1015 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261226940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:31 Heat of formation + Delta-G solvation = 70.614852 kcal Electronic energy + Delta-G solvation = -14846.776614 eV Core-core repulsion = 12387.007933 eV Total energy + Delta-G solvation = -2459.768681 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.47474 -37.77847 -34.03741 -33.25297 -32.25080 -30.68710 -28.32223 -26.71059 -24.94356 -23.16929 -21.94958 -21.30931 -19.49176 -17.44492 -16.54791 -16.17633 -15.61880 -15.12810 -14.52617 -14.37454 -13.80497 -13.65897 -12.96924 -12.79284 -12.55567 -12.22153 -12.00005 -11.55530 -11.32454 -10.86331 -10.81736 -10.79690 -10.53038 -9.93090 -9.68063 -9.26307 -9.00446 -8.24971 -8.13435 -7.58840 -5.88921 -3.91788 0.87245 1.44644 2.84326 3.19108 3.39989 3.43909 3.46499 3.78705 4.37859 4.52796 4.56176 4.70928 4.80809 5.09738 5.25154 5.32145 5.46249 5.47202 5.64449 5.75611 5.84732 5.95987 6.16181 6.23563 6.53524 6.65334 6.70817 6.95625 7.24413 7.36801 7.81511 7.98859 8.15574 8.36681 8.51663 9.15804 9.71083 11.22322 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.066289 B = 0.004654 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.290583 B = 6015.306401 C = 6204.499554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.069 4.069 5 C 0.209 3.791 6 N -0.476 5.476 7 C 0.093 3.907 8 C -0.040 4.040 9 C 0.031 3.969 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.114 4.114 19 N -0.363 5.363 20 C 0.054 3.946 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.137 0.863 25 H 0.149 0.851 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.013 0.987 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.179 0.821 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.587 2.384 6.609 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.127 4.127 3 C -0.135 4.135 4 C -0.089 4.089 5 C -0.034 4.034 6 N -0.196 5.196 7 C -0.040 4.040 8 C -0.078 4.078 9 C -0.006 4.006 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.244 4.244 19 N -0.035 5.035 20 C -0.069 4.069 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.155 0.845 25 H 0.167 0.833 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.836 2.939 6.455 20.127 hybrid contribution 0.231 -1.124 -0.175 1.161 sum -18.605 1.815 6.280 19.720 Atomic orbital electron populations 1.20613 0.89460 1.03104 1.02475 1.19353 0.96879 0.91848 1.04594 1.20841 0.93342 0.97801 1.01554 1.20260 0.93532 0.94923 1.00234 1.21109 0.87915 0.87323 1.07050 1.70757 1.12457 1.14867 1.21519 1.21561 0.95487 0.89470 0.97459 1.20296 0.88658 0.96619 1.02235 1.19006 0.92952 0.97472 0.91163 1.21235 1.01110 1.22165 1.11517 0.92648 1.25017 0.98450 0.95329 0.95609 1.69983 1.35216 1.33226 1.14884 0.86665 0.83780 0.80118 0.77450 1.20309 1.21366 1.20233 1.22505 0.88116 0.93407 1.20329 1.42794 1.05599 1.09144 1.45991 1.21320 0.81342 1.00031 1.04194 0.91065 0.90992 0.91495 0.84494 0.83349 0.91639 0.91327 0.96887 0.95422 0.93040 0.80366 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.00 36.01 0.36 -0.27 16 2 C -0.12 -1.26 5.85 -104.95 -0.61 -1.87 16 3 C -0.11 -1.21 9.74 -39.54 -0.38 -1.59 16 4 C -0.07 -0.97 10.11 -39.36 -0.40 -1.37 16 5 C 0.21 3.81 7.81 -156.04 -1.22 2.60 16 6 N -0.48 -10.49 11.29 -9.00 -0.10 -10.59 16 7 C 0.09 1.96 6.33 -82.97 -0.52 1.43 16 8 C -0.04 -0.89 5.71 -27.88 -0.16 -1.05 16 9 C 0.03 0.88 4.94 -27.88 -0.14 0.74 16 10 C -0.52 -15.34 9.11 -34.44 -0.31 -15.66 16 11 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -28.06 13.29 55.43 0.74 -27.33 16 14 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C -0.11 -1.98 11.63 -16.43 -0.19 -2.17 16 19 N -0.36 -5.89 2.94 -62.66 -0.18 -6.08 16 20 C 0.05 0.65 10.56 -16.65 -0.18 0.47 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 22 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 23 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 24 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 26 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 280.73 15.07 4.23 4.23 Total: -1.00 -35.03 280.73 -8.38 -43.41 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -4.18 Total: -3.70 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.85 Total: -17.14 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.45 Total: -44.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.03 -8.38 -43.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.021 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds