Wall clock time and date at job start Mon Mar 30 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40471 * 119.85152 * 2 1 4 4 C 1.36019 * 119.69409 * 179.97438 * 3 2 1 5 5 C 1.40935 * 119.32928 * 0.02562 * 4 3 2 6 6 N 1.32559 * 132.32813 * 180.35615 * 5 4 3 7 7 C 1.33521 * 109.15766 * 180.12496 * 6 5 4 8 8 C 1.50698 * 125.68420 * 179.82821 * 7 6 5 9 9 C 1.53006 * 109.47184 * 304.68994 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99944 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46926 * 60.00512 * 14 12 10 16 16 H 1.48506 * 109.46961 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47227 * 300.00303 * 14 12 10 18 18 C 1.35104 * 108.62339 * 359.56433 * 7 6 5 19 19 N 1.36834 * 107.18073 * 0.26173 * 18 7 6 20 20 C 1.34954 * 119.85256 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.47003 * 269.97572 * 1 2 3 22 22 H 1.08996 * 109.46767 * 29.97831 * 1 2 3 23 23 H 1.08999 * 109.46772 * 149.97742 * 1 2 3 24 24 H 1.08002 * 120.15010 * 0.02738 * 3 2 1 25 25 H 1.08006 * 120.33589 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.46665 * 184.69383 * 8 7 6 27 27 H 1.08993 * 109.47304 * 64.68939 * 8 7 6 28 28 H 1.09001 * 109.46801 * 300.00442 * 9 8 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 9 8 7 30 30 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 31 31 H 1.07998 * 126.40600 * 180.28617 * 18 7 6 32 32 H 1.08005 * 119.68962 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2183 0.0000 4 6 3.5664 1.2146 0.0005 5 6 4.2534 -0.0160 0.0005 6 7 5.5442 -0.3177 0.0070 7 6 5.6838 -1.6456 0.0008 8 6 6.9930 -2.3918 0.0014 9 6 7.8466 -1.9251 -1.1796 10 6 9.1556 -2.6718 -1.1794 11 1 9.3583 -3.4062 -0.4137 12 6 10.0941 -2.4183 -2.1571 13 7 9.8471 -1.5244 -3.0897 14 14 11.7163 -3.3444 -2.1572 15 1 11.4547 -4.8010 -2.2802 16 1 12.5443 -2.8922 -3.3041 17 1 12.4392 -3.0767 -0.8881 18 6 4.4556 -2.2086 -0.0003 19 7 3.5435 -1.1886 -0.0004 20 6 2.1788 -1.1705 -0.0005 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6663 2.1537 0.0004 25 1 4.1145 2.1453 0.0010 26 1 6.8017 -3.4611 -0.0888 27 1 7.5232 -2.1948 0.9331 28 1 7.3165 -2.1221 -2.1114 29 1 8.0379 -0.8558 -1.0895 30 1 10.5074 -1.3458 -3.7773 31 1 4.2351 -3.2658 -0.0005 32 1 1.6313 -2.1015 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261226940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:30 Heat of formation + Delta-G solvation = 49.131110 kcal Electronic energy + Delta-G solvation = -14847.708219 eV Core-core repulsion = 12387.007933 eV Total energy + Delta-G solvation = -2460.700286 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.71323 -38.86497 -35.90637 -34.60312 -33.76624 -32.19487 -29.75117 -27.95089 -26.53794 -24.41500 -23.32575 -22.84400 -21.04163 -18.66400 -18.41702 -17.56373 -16.91048 -16.46572 -16.12276 -15.59989 -15.04385 -14.81392 -14.46677 -14.22286 -14.03757 -13.26696 -13.14984 -13.05104 -12.80191 -12.56180 -12.38496 -12.29202 -11.92175 -11.79954 -11.50757 -11.27231 -10.86484 -10.53660 -9.42168 -8.78060 -8.17642 -6.31174 -0.13458 0.34153 1.40426 1.45816 1.53388 1.71434 1.90733 2.42952 2.58017 3.14600 3.31166 3.51958 3.81929 3.96598 4.11480 4.34955 4.38338 4.54792 4.70011 4.76919 4.86358 4.92106 4.93229 5.10031 5.18367 5.27252 5.35892 5.49301 5.66386 5.69676 5.71105 5.85926 6.20628 6.24984 6.86348 7.01840 7.38235 8.94794 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.066289 B = 0.004654 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.290583 B = 6015.306401 C = 6204.499554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.113 4.113 3 C -0.079 4.079 4 C -0.109 4.109 5 C 0.193 3.807 6 N -0.543 5.543 7 C 0.045 3.955 8 C -0.024 4.024 9 C 0.043 3.957 10 C -0.545 4.545 11 H 0.069 0.931 12 C -0.005 4.005 13 N -0.938 5.938 14 Si 0.974 3.026 15 H -0.261 1.261 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.103 4.103 19 N -0.365 5.365 20 C 0.036 3.964 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.180 0.820 25 H 0.153 0.847 26 H 0.087 0.913 27 H 0.063 0.937 28 H -0.020 1.020 29 H -0.017 1.017 30 H 0.263 0.737 31 H 0.214 0.786 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.227 1.496 7.283 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.129 4.129 5 C -0.051 4.051 6 N -0.265 5.265 7 C -0.087 4.087 8 C -0.063 4.063 9 C 0.006 3.994 10 C -0.583 4.583 11 H 0.088 0.912 12 C -0.202 4.202 13 N -0.578 5.578 14 Si 0.797 3.203 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.233 4.233 19 N -0.036 5.036 20 C -0.085 4.085 21 H 0.106 0.894 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.197 0.803 25 H 0.171 0.829 26 H 0.106 0.894 27 H 0.081 0.919 28 H -0.002 1.002 29 H 0.001 0.999 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.508 2.039 7.146 22.756 hybrid contribution 0.781 -0.701 -0.387 1.119 sum -20.727 1.337 6.759 21.842 Atomic orbital electron populations 1.20745 0.85846 1.04759 1.04012 1.20001 0.99190 0.90854 1.01543 1.21436 0.91987 1.00052 0.96793 1.20538 0.95131 0.93800 1.03435 1.21591 0.87372 0.89343 1.06790 1.70582 1.15423 1.15857 1.24639 1.21362 0.96151 0.89832 1.01313 1.19968 0.89104 0.97947 0.99238 1.18766 0.93693 0.94800 0.92142 1.21709 1.01887 1.22616 1.12088 0.91250 1.26118 1.03047 0.96187 0.94870 1.70160 1.36889 1.35007 1.15768 0.85375 0.77985 0.79055 0.77839 1.18550 1.20922 1.19038 1.22766 0.87102 0.94861 1.18619 1.42939 1.07105 1.08027 1.45572 1.22158 0.79544 1.02628 1.04188 0.89356 0.89305 0.90023 0.80312 0.82904 0.89429 0.91880 1.00198 0.99895 0.92838 0.76905 0.79053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.00 71.24 0.71 0.02 16 2 C -0.11 -1.85 5.85 -20.07 -0.12 -1.97 16 3 C -0.08 -1.45 9.74 22.30 0.22 -1.24 16 4 C -0.11 -3.04 10.11 22.41 0.23 -2.81 16 5 C 0.19 7.28 7.81 134.11 1.05 8.32 16 6 N -0.54 -25.76 11.29 -182.40 -2.06 -27.82 16 7 C 0.04 2.00 6.33 41.58 0.26 2.27 16 8 C -0.02 -1.15 5.71 29.85 0.17 -0.98 16 9 C 0.04 2.60 4.94 29.85 0.15 2.75 16 10 C -0.55 -33.17 9.11 25.60 0.23 -32.93 16 11 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 12 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 13 N -0.94 -61.27 13.29 21.45 0.28 -60.98 16 14 Si 0.97 46.20 29.54 68.60 2.03 48.22 16 15 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 C -0.10 -3.59 11.63 83.19 0.97 -2.62 16 19 N -0.37 -11.63 2.94 -352.16 -1.04 -12.66 16 20 C 0.04 0.75 10.56 83.21 0.88 1.63 16 21 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 22 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 23 H 0.08 0.42 8.07 -2.39 -0.02 0.41 16 24 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 25 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 26 H 0.09 3.64 8.10 -2.39 -0.02 3.62 16 27 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 28 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 29 H -0.02 -1.18 8.14 -2.39 -0.02 -1.19 16 30 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.21 5.50 8.06 -2.91 -0.02 5.47 16 32 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -82.91 280.73 5.52 -77.39 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.10 Total: 3.26 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 5.21 Total: -27.41 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.81 Total: -101.47 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -82.91 5.52 -77.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261226940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.525 kcal (2) G-P(sol) polarization free energy of solvation -82.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds