Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33404 * 126.26875 * 2 1 4 4 C 1.30900 * 109.86896 * 180.02562 * 3 2 1 5 5 N 1.35035 * 109.37655 * 359.97438 * 4 3 2 6 6 C 1.37059 * 133.12488 * 180.02562 * 5 4 3 7 7 C 1.34669 * 120.56356 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.69203 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47466 * 90.00005 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.40811 * 120.61594 * 0.25747 * 7 6 5 19 19 C 1.35881 * 119.76940 * 359.44400 * 18 7 6 20 20 C 1.37994 * 126.27180 * 180.02562 * 2 1 3 21 21 H 1.09007 * 109.47051 * 89.97851 * 1 2 3 22 22 H 1.08996 * 109.47254 * 209.97310 * 1 2 3 23 23 H 1.09000 * 109.47362 * 329.97961 * 1 2 3 24 24 H 1.08003 * 125.31491 * 179.97438 * 4 3 2 25 25 H 1.08005 * 119.71772 * 0.02562 * 6 5 4 26 26 H 1.09002 * 109.47120 * 329.99758 * 8 7 6 27 27 H 1.08998 * 109.46862 * 210.00560 * 8 7 6 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 31 31 H 1.07993 * 120.11650 * 179.74650 * 18 7 6 32 32 H 1.08005 * 120.40987 * 180.24901 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2962 1.0756 0.0000 4 6 3.5519 0.7060 -0.0006 5 7 3.6221 -0.6425 -0.0004 6 6 4.6697 -1.5262 -0.0003 7 6 4.4455 -2.8541 0.0004 8 6 5.6120 -3.8081 -0.0001 9 6 6.0080 -4.1305 1.4422 10 6 7.1742 -5.0850 1.4416 11 1 7.5915 -5.4272 0.5061 12 6 7.7090 -5.5206 2.6355 13 7 7.2012 -5.1035 3.7746 14 14 9.1550 -6.7032 2.6347 15 1 10.3051 -6.0785 1.9331 16 1 9.5392 -7.0161 4.0346 17 1 8.7699 -7.9557 1.9359 18 6 3.1312 -3.3595 -0.0043 19 6 2.0782 -2.5007 0.0017 20 6 2.3234 -1.1125 -0.0005 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5141 24 1 4.3997 1.3752 -0.0011 25 1 5.6838 -1.1545 0.0000 26 1 6.4563 -3.3494 -0.5148 27 1 5.3295 -4.7272 -0.5134 28 1 5.1637 -4.5892 1.9569 29 1 6.2906 -3.2113 1.9554 30 1 7.5772 -5.4103 4.6145 31 1 2.9607 -4.4259 -0.0079 32 1 1.0658 -2.8771 0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = 47.213069 kcal Electronic energy + Delta-G solvation = -14971.932336 eV Core-core repulsion = 12511.148877 eV Total energy + Delta-G solvation = -2460.783459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.70551 -38.97559 -35.77999 -34.78737 -33.77853 -31.29200 -30.56086 -27.44805 -26.79819 -24.54054 -23.63174 -21.95021 -21.47646 -18.67292 -18.47062 -17.55462 -16.87948 -16.52247 -16.29240 -15.44838 -15.15166 -14.66611 -14.46433 -14.02449 -13.93656 -13.57690 -13.17521 -13.02292 -12.85893 -12.65364 -12.42247 -12.38277 -11.76746 -11.58127 -11.42912 -11.27551 -11.20647 -10.55274 -9.97718 -8.31252 -8.19312 -6.31756 -0.08788 0.33542 1.42299 1.44380 1.52334 1.73059 2.04429 2.40567 2.49010 3.14058 3.54006 3.59890 3.83135 3.91661 4.03032 4.09078 4.44162 4.55304 4.65755 4.82479 4.84719 4.89967 5.04091 5.08406 5.13689 5.21641 5.36646 5.49709 5.61471 5.74910 5.76056 5.83406 6.20702 6.26753 6.85671 6.90518 7.38365 8.91325 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.054404 B = 0.004949 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.540547 B = 5656.116530 C = 5776.765467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.015 4.015 3 N -0.485 5.485 4 C 0.128 3.872 5 N -0.367 5.367 6 C 0.022 3.978 7 C -0.083 4.083 8 C -0.055 4.055 9 C 0.035 3.965 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.125 4.125 19 C -0.075 4.075 20 C -0.027 4.027 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.237 0.763 25 H 0.178 0.822 26 H 0.073 0.927 27 H 0.077 0.923 28 H -0.009 1.009 29 H -0.011 1.011 30 H 0.263 0.737 31 H 0.149 0.851 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 6.161 -8.972 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.151 4.151 3 N -0.200 5.200 4 C -0.146 4.146 5 N -0.037 5.037 6 C -0.096 4.096 7 C -0.086 4.086 8 C -0.093 4.093 9 C -0.002 4.002 10 C -0.581 4.581 11 H 0.085 0.915 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.788 3.212 15 H -0.191 1.191 16 H -0.213 1.213 17 H -0.190 1.190 18 C -0.145 4.145 19 C -0.094 4.094 20 C -0.136 4.136 21 H 0.099 0.901 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.253 0.747 25 H 0.195 0.805 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.454 7.081 -8.795 14.726 hybrid contribution 1.338 -1.251 0.546 1.911 sum -8.116 5.830 -8.249 12.958 Atomic orbital electron populations 1.20080 0.84730 1.03580 1.03182 1.21521 0.97750 0.86180 1.09672 1.69872 1.00969 1.31134 1.18050 1.25392 0.97646 0.80390 1.11202 1.42967 1.06973 1.08106 1.45639 1.21640 0.92240 0.89140 1.06628 1.19900 0.96931 0.93051 0.98682 1.20502 0.93594 0.96831 0.98416 1.18935 0.94827 0.94861 0.91550 1.21679 1.16031 1.27499 0.92856 0.91506 1.25961 1.00146 0.98338 0.95235 1.70100 1.43300 1.46042 0.98040 0.85523 0.79293 0.79320 0.77057 1.19077 1.21269 1.19021 1.21297 0.91130 1.01530 1.00592 1.20792 1.01447 0.88182 0.98972 1.19902 0.84481 0.96034 1.13151 0.90138 0.89637 0.90924 0.74689 0.80522 0.90803 0.90471 0.99038 0.99224 0.92855 0.83322 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 10.44 71.24 0.74 -0.44 16 2 C -0.02 -0.45 7.21 42.26 0.30 -0.15 16 3 N -0.48 -15.31 11.19 -186.13 -2.08 -17.40 16 4 C 0.13 3.69 12.75 180.15 2.30 5.99 16 5 N -0.37 -11.50 2.94 -351.44 -1.03 -12.53 16 6 C 0.02 0.70 10.57 83.06 0.88 1.58 16 7 C -0.08 -2.76 5.10 -20.05 -0.10 -2.86 16 8 C -0.06 -2.07 5.26 29.85 0.16 -1.91 16 9 C 0.04 1.77 4.95 29.85 0.15 1.92 16 10 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 11 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 12 C 0.00 0.06 5.46 84.66 0.46 0.52 16 13 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 14 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 C -0.12 -3.71 9.73 22.35 0.22 -3.49 16 19 C -0.07 -2.01 10.10 22.39 0.23 -1.78 16 20 C -0.03 -0.81 6.74 38.77 0.26 -0.55 16 21 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.24 4.85 8.06 -2.91 -0.02 4.82 16 25 H 0.18 4.82 8.06 -2.91 -0.02 4.80 16 26 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 27 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -67.69 280.85 6.12 -61.57 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.10 Total: 9.52 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 5.83 Total: -30.34 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.83 Total: -85.62 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.69 6.12 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.785 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds