Wall clock time and date at job start Mon Mar 30 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86804 * 119.99515 * 2 1 4 4 H 1.48505 * 109.46738 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47096 * 60.00312 * 3 2 1 7 7 C 1.37873 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99812 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.34366 * 57.88666 * 9 7 2 11 11 C 1.54407 * 110.29557 * 180.02562 * 9 7 2 12 12 C 1.54419 * 102.62199 * 92.88248 * 11 9 7 13 13 C 1.51050 * 105.15261 * 26.02099 * 12 11 9 14 14 C 1.38570 * 131.54014 * 162.99861 * 13 12 11 15 15 N 1.32350 * 119.03445 * 180.02562 * 14 13 12 16 16 C 1.31805 * 120.76806 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.09622 * 180.02562 * 16 15 14 18 18 C 1.52998 * 117.49411 * 8.60008 * 17 16 15 19 19 C 1.52994 * 60.00212 * 252.51168 * 18 17 16 20 20 N 1.31775 * 121.81595 * 359.97438 * 16 15 14 21 21 C 1.32451 * 120.79906 * 0.02562 * 20 16 15 22 22 H 0.96998 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.81391 * 334.54390 * 11 9 7 24 24 H 1.08998 * 110.80928 * 211.21805 * 11 9 7 25 25 H 1.08999 * 110.30321 * 144.94156 * 12 11 9 26 26 H 1.09003 * 110.30519 * 266.99725 * 12 11 9 27 27 H 1.08000 * 120.47875 * 359.96568 * 14 13 12 28 28 H 1.08995 * 115.55208 * 154.30872 * 17 16 15 29 29 H 1.09003 * 117.50303 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.50001 * 145.02129 * 18 17 16 31 31 H 1.09005 * 117.49992 * 252.51220 * 19 18 17 32 32 H 1.08997 * 117.50096 * 107.49271 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5908 -2.5554 -0.8660 11 6 2.2376 -3.6870 -0.0005 12 6 2.3948 -3.9950 1.5044 13 6 1.1157 -3.5075 2.1430 14 6 0.5443 -3.7753 3.3767 15 7 -0.6072 -3.2027 3.6892 16 6 -1.2065 -2.3881 2.8438 17 6 -2.5163 -1.7562 3.2387 18 6 -2.9810 -1.9387 4.6850 19 6 -3.6851 -2.6916 3.5544 20 7 -0.6913 -2.1103 1.6632 21 6 0.4582 -2.6463 1.2817 22 1 -0.4850 0.8400 -0.0004 23 1 3.1928 -3.3973 -0.4385 24 1 1.8146 -4.5416 -0.5286 25 1 2.5109 -5.0675 1.6609 26 1 3.2516 -3.4590 1.9127 27 1 1.0312 -4.4425 4.0726 28 1 -2.7472 -0.8090 2.7513 29 1 -2.3391 -2.5156 5.3509 30 1 -3.5177 -1.1115 5.1494 31 1 -4.6851 -2.3596 3.2750 32 1 -3.5068 -3.7641 3.4764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228123.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:42 Heat of formation + Delta-G solvation = 68.218921 kcal Electronic energy + Delta-G solvation = -15782.940622 eV Core-core repulsion = 13323.068046 eV Total energy + Delta-G solvation = -2459.872577 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39244 -37.20519 -35.45402 -32.79895 -32.13106 -29.14175 -27.59380 -24.46343 -23.51496 -22.62618 -22.00698 -19.99065 -19.38228 -16.88985 -16.75329 -15.71697 -14.56101 -14.49436 -14.22543 -13.76186 -13.39332 -13.11574 -12.37684 -11.98616 -11.79897 -11.39190 -11.20595 -11.10416 -10.86503 -10.59197 -10.53055 -10.23517 -10.12163 -9.92820 -9.77722 -9.41819 -9.00779 -8.50582 -7.95656 -7.87457 -5.99722 -4.13634 1.85092 2.22704 3.26597 3.34915 3.37197 4.12114 4.38292 4.52507 4.85887 4.94394 5.23276 5.29314 5.35071 5.47500 5.58460 5.63518 5.76513 5.87678 5.90070 6.05247 6.11418 6.40140 6.44362 6.45031 6.56461 6.68223 6.81118 6.87090 7.05791 7.49269 7.51331 7.84573 8.11295 8.18959 8.85507 9.29892 9.50235 11.01005 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.010568 C = 0.008000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.562059 B = 2648.993318 C = 3499.144252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.065 3.935 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.087 3.913 10 H 0.048 0.952 11 C -0.115 4.115 12 C -0.057 4.057 13 C -0.235 4.235 14 C 0.135 3.865 15 N -0.544 5.544 16 C 0.320 3.680 17 C -0.081 4.081 18 C -0.161 4.161 19 C -0.162 4.162 20 N -0.457 5.457 21 C 0.230 3.770 22 H 0.261 0.739 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.148 0.852 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -5.877 5.172 7.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.142 4.142 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.068 3.932 10 H 0.066 0.934 11 C -0.153 4.153 12 C -0.095 4.095 13 C -0.240 4.240 14 C -0.029 4.029 15 N -0.260 5.260 16 C 0.053 3.947 17 C -0.102 4.102 18 C -0.199 4.199 19 C -0.200 4.200 20 N -0.168 5.168 21 C 0.083 3.917 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.599 -5.334 5.424 8.039 hybrid contribution 1.290 0.740 -0.017 1.487 sum -1.309 -4.594 5.407 7.215 Atomic orbital electron populations 1.70130 1.05275 1.26315 1.45045 1.25131 0.94987 0.99200 0.94901 0.86614 0.80269 0.84055 0.77628 1.19667 1.20761 1.21165 1.20900 0.92650 0.88919 1.53995 0.91770 1.18440 0.91388 0.93744 0.89674 0.93448 1.22393 1.00742 0.98025 0.94135 1.20689 0.93830 0.99073 0.95957 1.22287 1.00767 1.03323 0.97599 1.22254 0.91041 0.96139 0.93496 1.67949 1.10400 1.12167 1.35440 1.22025 0.94697 0.91228 0.86726 1.20489 0.89964 1.00467 0.99233 1.22939 1.03053 1.02765 0.91135 1.22890 0.95809 0.98163 1.03162 1.67758 1.12597 1.21145 1.15327 1.23270 0.86628 0.83430 0.98373 0.92919 0.90736 0.92944 0.92210 0.90709 0.83500 0.85777 0.87611 0.88931 0.88604 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.93 11.63 55.43 0.64 -23.28 16 2 C 0.07 1.80 5.34 -17.82 -0.10 1.70 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.53 -14.11 8.49 -34.44 -0.29 -14.41 16 8 H 0.06 1.67 7.59 -52.49 -0.40 1.28 16 9 C 0.09 2.15 2.79 -91.80 -0.26 1.89 16 10 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.11 -2.23 6.58 -25.25 -0.17 -2.40 16 12 C -0.06 -1.03 6.76 -26.97 -0.18 -1.21 16 13 C -0.23 -4.98 6.20 -104.26 -0.65 -5.63 16 14 C 0.13 2.64 11.31 -17.21 -0.19 2.45 16 15 N -0.54 -11.39 9.35 -10.73 -0.10 -11.49 16 16 C 0.32 7.21 7.31 -157.20 -1.15 6.06 16 17 C -0.08 -1.52 6.24 -91.77 -0.57 -2.10 16 18 C -0.16 -2.43 10.01 -26.74 -0.27 -2.69 16 19 C -0.16 -2.44 10.23 -26.73 -0.27 -2.71 16 20 N -0.46 -11.70 9.05 -6.77 -0.06 -11.76 16 21 C 0.23 5.71 6.16 -81.88 -0.50 5.21 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.07 1.37 7.74 -51.93 -0.40 0.97 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.12 2.37 8.14 -51.93 -0.42 1.94 16 29 H 0.11 1.66 7.54 -51.93 -0.39 1.27 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -30.26 272.67 -9.16 -39.42 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.13 Total: 0.68 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -4.60 Total: -13.84 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.48 Total: -46.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.26 -9.16 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228123.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.636 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds