Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86804 * 119.99515 * 2 1 4 4 H 1.48505 * 109.46738 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47232 * 299.99889 * 3 2 1 6 6 H 1.48501 * 109.47096 * 60.00312 * 3 2 1 7 7 C 1.37873 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99812 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.34366 * 57.88666 * 9 7 2 11 11 C 1.54407 * 110.29557 * 180.02562 * 9 7 2 12 12 C 1.54419 * 102.62199 * 92.88248 * 11 9 7 13 13 C 1.51050 * 105.15261 * 26.02099 * 12 11 9 14 14 C 1.38570 * 131.54014 * 162.99861 * 13 12 11 15 15 N 1.32350 * 119.03445 * 180.02562 * 14 13 12 16 16 C 1.31805 * 120.76806 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.09622 * 180.02562 * 16 15 14 18 18 C 1.52998 * 117.49411 * 8.60008 * 17 16 15 19 19 C 1.52994 * 60.00212 * 252.51168 * 18 17 16 20 20 N 1.31775 * 121.81595 * 359.97438 * 16 15 14 21 21 C 1.32451 * 120.79906 * 0.02562 * 20 16 15 22 22 H 0.96998 * 120.00181 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.81391 * 334.54390 * 11 9 7 24 24 H 1.08998 * 110.80928 * 211.21805 * 11 9 7 25 25 H 1.08999 * 110.30321 * 144.94156 * 12 11 9 26 26 H 1.09003 * 110.30519 * 266.99725 * 12 11 9 27 27 H 1.08000 * 120.47875 * 359.96568 * 14 13 12 28 28 H 1.08995 * 115.55208 * 154.30872 * 17 16 15 29 29 H 1.09003 * 117.50303 * 0.02562 * 18 17 16 30 30 H 1.09001 * 117.50001 * 145.02129 * 18 17 16 31 31 H 1.09005 * 117.49992 * 252.51220 * 19 18 17 32 32 H 1.08997 * 117.50096 * 107.49271 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5908 -2.5554 -0.8660 11 6 2.2376 -3.6870 -0.0005 12 6 2.3948 -3.9950 1.5044 13 6 1.1157 -3.5075 2.1430 14 6 0.5443 -3.7753 3.3767 15 7 -0.6072 -3.2027 3.6892 16 6 -1.2065 -2.3881 2.8438 17 6 -2.5163 -1.7562 3.2387 18 6 -2.9810 -1.9387 4.6850 19 6 -3.6851 -2.6916 3.5544 20 7 -0.6913 -2.1103 1.6632 21 6 0.4582 -2.6463 1.2817 22 1 -0.4850 0.8400 -0.0004 23 1 3.1928 -3.3973 -0.4385 24 1 1.8146 -4.5416 -0.5286 25 1 2.5109 -5.0675 1.6609 26 1 3.2516 -3.4590 1.9127 27 1 1.0312 -4.4425 4.0726 28 1 -2.7472 -0.8090 2.7513 29 1 -2.3391 -2.5156 5.3509 30 1 -3.5177 -1.1115 5.1494 31 1 -4.6851 -2.3596 3.2750 32 1 -3.5068 -3.7641 3.4764 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228123.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 51.145684 kcal Electronic energy + Delta-G solvation = -15783.680973 eV Core-core repulsion = 13323.068046 eV Total energy + Delta-G solvation = -2460.612928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.03194 -38.67816 -36.96982 -34.63136 -33.97642 -30.81644 -29.29686 -26.33519 -25.13746 -24.17911 -23.20771 -21.54455 -21.06526 -18.70470 -18.50214 -17.26702 -16.51129 -16.05891 -15.70111 -15.20369 -14.97057 -14.69949 -14.28204 -13.68847 -13.38279 -13.00388 -12.90787 -12.61442 -12.38853 -12.36010 -12.17595 -11.83018 -11.57218 -11.50300 -11.29982 -11.20453 -10.80852 -10.58780 -9.61638 -9.52745 -8.06584 -6.26218 0.22428 0.55223 1.35435 1.37400 1.47759 2.38158 2.75532 3.03735 3.17938 3.28908 3.49323 3.81174 3.95773 4.01307 4.11517 4.22105 4.26623 4.44621 4.60307 4.75482 4.78147 4.93520 5.01392 5.10425 5.19211 5.25884 5.30773 5.33286 5.45570 5.57234 5.68838 5.89125 6.18819 6.45309 6.80412 7.39796 7.62343 8.93106 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.010568 C = 0.008000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.562059 B = 2648.993318 C = 3499.144252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.074 3.926 10 H 0.006 0.994 11 C -0.107 4.107 12 C -0.048 4.048 13 C -0.238 4.238 14 C 0.138 3.862 15 N -0.541 5.541 16 C 0.305 3.695 17 C -0.123 4.123 18 C -0.136 4.136 19 C -0.141 4.141 20 N -0.503 5.503 21 C 0.190 3.810 22 H 0.256 0.744 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.197 0.803 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -7.073 6.904 9.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.219 1.219 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.055 3.945 10 H 0.024 0.976 11 C -0.145 4.145 12 C -0.086 4.086 13 C -0.242 4.242 14 C -0.026 4.026 15 N -0.256 5.256 16 C 0.038 3.962 17 C -0.144 4.144 18 C -0.173 4.173 19 C -0.179 4.179 20 N -0.215 5.215 21 C 0.043 3.957 22 H 0.065 0.935 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.213 0.787 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.747 -6.540 7.145 9.842 hybrid contribution 0.983 1.061 -0.556 1.550 sum -0.763 -5.478 6.589 8.603 Atomic orbital electron populations 1.70304 1.06687 1.26481 1.46649 1.25908 0.95733 1.02505 0.94950 0.85657 0.79621 0.80153 0.77186 1.18345 1.20319 1.21913 1.21263 0.92974 0.90131 1.53131 0.91384 1.18492 0.91969 0.95380 0.88697 0.97613 1.22342 0.99646 0.96385 0.96094 1.20727 0.92240 1.01672 0.93947 1.22633 1.01569 1.02317 0.97682 1.23041 0.90302 0.95655 0.93631 1.68070 1.10926 1.11862 1.34730 1.22622 0.95858 0.91549 0.86158 1.20563 0.90270 1.01018 1.02506 1.23028 1.01953 1.03103 0.89262 1.22991 0.95608 0.97340 1.01940 1.67681 1.13889 1.22717 1.17259 1.23313 0.87633 0.85515 0.99197 0.93540 0.89838 0.91144 0.87934 0.89997 0.78668 0.87425 0.88024 0.86143 0.85952 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.00 11.63 21.45 0.25 -51.75 16 2 C 0.01 0.73 5.34 84.65 0.45 1.18 16 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.54 -29.34 8.49 25.60 0.22 -29.12 16 8 H 0.07 3.55 7.59 -2.91 -0.02 3.53 16 9 C 0.07 3.76 2.79 -11.56 -0.03 3.72 16 10 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 11 C -0.11 -4.01 6.58 31.55 0.21 -3.81 16 12 C -0.05 -1.58 6.76 30.44 0.21 -1.37 16 13 C -0.24 -9.71 6.20 -19.63 -0.12 -9.83 16 14 C 0.14 5.07 11.31 84.69 0.96 6.02 16 15 N -0.54 -21.94 9.35 -187.87 -1.76 -23.70 16 16 C 0.30 13.87 7.31 138.75 1.01 14.89 16 17 C -0.12 -4.64 6.24 -11.54 -0.07 -4.71 16 18 C -0.14 -3.82 10.01 30.59 0.31 -3.51 16 19 C -0.14 -4.00 10.23 30.59 0.31 -3.69 16 20 N -0.50 -26.71 9.05 -175.33 -1.59 -28.30 16 21 C 0.19 9.60 6.16 42.76 0.26 9.87 16 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 23 H 0.08 2.94 7.74 -2.39 -0.02 2.92 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.08 2.61 8.14 -2.39 -0.02 2.60 16 27 H 0.20 5.12 8.06 -2.91 -0.02 5.10 16 28 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 29 H 0.10 2.96 7.54 -2.39 -0.02 2.95 16 30 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.12 2.80 8.14 -2.38 -0.02 2.78 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -68.82 272.67 3.76 -65.06 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.11 Total: 12.60 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 3.71 Total: -20.36 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.09 Total: -103.75 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.82 3.76 -65.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228123.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.208 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds