Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48505 * 109.47278 * 264.75186 * 3 2 1 5 5 H 1.48507 * 109.47401 * 24.75087 * 3 2 1 6 6 H 1.48499 * 109.47280 * 144.75014 * 3 2 1 7 7 C 1.37877 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00019 * 0.51322 * 7 2 1 9 9 C 1.50703 * 120.00048 * 180.50513 * 7 2 1 10 10 H 1.08996 * 110.34178 * 337.27519 * 9 7 2 11 11 C 1.54405 * 110.29787 * 215.15828 * 9 7 2 12 12 C 1.54416 * 102.44463 * 214.92648 * 11 9 7 13 13 C 1.51052 * 105.15036 * 26.12838 * 12 11 9 14 14 C 1.38569 * 131.53266 * 162.96177 * 13 12 11 15 15 N 1.32347 * 119.02712 * 180.02562 * 14 13 12 16 16 C 1.31814 * 120.77009 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.09150 * 180.02562 * 16 15 14 18 18 C 1.52999 * 117.49968 * 8.62280 * 17 16 15 19 19 C 1.53001 * 60.00096 * 252.50961 * 18 17 16 20 20 N 1.31761 * 121.81748 * 0.02562 * 16 15 14 21 21 C 1.32458 * 120.79697 * 359.97438 * 20 16 15 22 22 H 0.96995 * 119.99884 * 0.02562 * 1 2 3 23 23 H 1.08990 * 110.81218 * 333.17472 * 11 9 7 24 24 H 1.09000 * 110.80737 * 96.68994 * 11 9 7 25 25 H 1.09007 * 110.30286 * 145.04386 * 12 11 9 26 26 H 1.08996 * 110.30992 * 267.10440 * 12 11 9 27 27 H 1.07995 * 120.48667 * 359.97438 * 14 13 12 28 28 H 1.09006 * 115.54956 * 154.33549 * 17 16 15 29 29 H 1.08999 * 117.50200 * 0.02562 * 18 17 16 30 30 H 1.09003 * 117.49890 * 145.02288 * 18 17 16 31 31 H 1.08992 * 117.50174 * 252.51056 * 19 18 17 32 32 H 1.08997 * 117.51471 * 107.47965 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3942 5 1 1.3955 2.6823 0.5862 6 1 3.4868 1.4748 0.8080 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 -0.0074 9 6 3.5116 -1.1940 0.0120 10 1 3.8934 -0.2497 -0.3761 11 6 4.0536 -2.3746 -0.8224 12 6 5.3227 -2.7792 -0.0413 13 6 5.0665 -2.3422 1.3818 14 6 5.6768 -2.6942 2.5750 15 7 5.2456 -2.1501 3.7018 16 6 4.2510 -1.2851 3.6955 17 6 3.7908 -0.6883 5.0005 18 6 4.6385 -0.9679 6.2431 19 6 3.2789 -1.6493 6.0754 20 7 3.6480 -0.9278 2.5798 21 6 4.0253 -1.4309 1.4140 22 1 -0.4850 0.8400 -0.0004 23 1 3.3355 -3.1941 -0.8460 24 1 4.3070 -2.0511 -1.8320 25 1 5.4658 -3.8590 -0.0855 26 1 6.1953 -2.2658 -0.4450 27 1 6.4917 -3.4027 2.5855 28 1 3.3103 0.2875 4.9278 29 1 5.5292 -1.5833 6.1167 30 1 4.7160 -0.1761 6.9882 31 1 2.4620 -1.3058 6.7099 32 1 3.2746 -2.7132 5.8384 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = 66.651654 kcal Electronic energy + Delta-G solvation = -15653.690700 eV Core-core repulsion = 13193.750162 eV Total energy + Delta-G solvation = -2459.940538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75317 -37.42838 -35.66642 -33.04987 -32.38209 -29.50582 -28.27198 -24.39503 -23.84219 -22.61021 -22.14536 -20.28760 -19.44507 -17.31275 -16.98589 -16.19473 -14.79042 -14.70753 -14.26779 -13.86268 -13.49682 -13.38205 -12.73172 -12.23828 -12.09633 -11.86257 -11.41190 -11.34401 -10.89348 -10.73393 -10.43131 -10.32872 -10.18918 -10.08794 -9.76812 -9.71245 -9.27967 -8.67631 -8.29253 -8.24814 -6.12847 -4.14605 1.50112 1.83560 3.28625 3.38212 3.46067 3.91258 4.21580 4.42266 4.49289 4.69606 4.99900 5.11245 5.11874 5.27707 5.33370 5.44675 5.47379 5.66847 5.78660 5.81105 5.95915 6.15579 6.21404 6.28419 6.36893 6.38364 6.52982 6.60885 6.80618 7.00307 7.14391 7.54968 7.76329 8.40092 8.85013 8.91486 9.49344 10.99416 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.010804 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.352762 B = 2590.958751 C = 3425.668192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.086 3.914 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.050 3.950 10 H 0.061 0.939 11 C -0.105 4.105 12 C -0.070 4.070 13 C -0.234 4.234 14 C 0.146 3.854 15 N -0.536 5.536 16 C 0.333 3.667 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.157 4.157 20 N -0.490 5.490 21 C 0.208 3.792 22 H 0.266 0.734 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.743 -3.073 5.561 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.118 4.118 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.541 4.541 8 H 0.094 0.906 9 C 0.030 3.970 10 H 0.079 0.921 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.238 4.238 14 C -0.019 4.019 15 N -0.251 5.251 16 C 0.066 3.934 17 C -0.111 4.111 18 C -0.196 4.196 19 C -0.195 4.195 20 N -0.203 5.203 21 C 0.061 3.939 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.172 0.828 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.252 -2.552 6.418 12.361 hybrid contribution 0.570 0.506 -0.691 1.029 sum 10.822 -2.046 5.726 12.413 Atomic orbital electron populations 1.69881 1.06415 1.27281 1.49138 1.25003 0.94646 0.99035 0.93130 0.86819 0.80907 0.83542 0.78218 1.20386 1.21296 1.18586 1.20705 0.86965 0.94811 1.51669 0.90628 1.18907 0.98101 0.95692 0.84259 0.92143 1.22391 0.94774 0.99094 0.98095 1.20882 0.99515 1.00492 0.89928 1.22342 1.00693 1.03217 0.97577 1.22407 0.96953 0.95767 0.86759 1.68024 1.15124 1.11817 1.30142 1.21971 0.88291 0.90274 0.92853 1.20530 1.05227 1.00457 0.84906 1.22969 0.95648 1.03206 0.97759 1.22920 0.97619 0.98464 1.00547 1.67463 1.28162 1.26894 0.97756 1.23527 0.86921 0.87460 0.95952 0.92438 0.90802 0.90973 0.91304 0.90806 0.82846 0.85731 0.87471 0.88676 0.88259 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.88 22.01 26.91 -169.99 -4.57 17.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.55 6.95 56.52 0.39 -6.16 16 7 C -0.50 -14.03 8.86 -34.44 -0.31 -14.33 16 8 H 0.08 2.29 7.97 -52.49 -0.42 1.87 16 9 C 0.05 1.17 2.45 -91.95 -0.23 0.94 16 10 H 0.06 1.42 5.44 -51.93 -0.28 1.14 16 11 C -0.11 -1.95 6.58 -25.25 -0.17 -2.12 16 12 C -0.07 -1.10 6.76 -26.97 -0.18 -1.28 16 13 C -0.23 -4.44 6.20 -104.27 -0.65 -5.09 16 14 C 0.15 2.53 11.31 -17.21 -0.19 2.33 16 15 N -0.54 -10.13 9.35 -10.73 -0.10 -10.23 16 16 C 0.33 6.89 7.31 -157.21 -1.15 5.74 16 17 C -0.09 -1.56 6.23 -91.77 -0.57 -2.13 16 18 C -0.16 -2.12 10.01 -26.73 -0.27 -2.39 16 19 C -0.16 -2.23 10.23 -26.73 -0.27 -2.51 16 20 N -0.49 -11.78 10.34 -6.86 -0.07 -11.85 16 21 C 0.21 4.80 6.67 -82.03 -0.55 4.26 16 22 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.07 1.41 7.85 -51.93 -0.41 1.00 16 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 29 H 0.11 1.49 7.54 -51.93 -0.39 1.10 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 271.97 15.07 4.10 4.10 Total: -1.00 -31.94 271.97 -8.53 -40.46 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.03 Total: 0.64 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -4.63 Total: -14.21 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.60 Total: -48.44 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.57 Total: 17.44 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.94 -8.53 -40.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.116 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds