Wall clock time and date at job start Mon Mar 30 2020 02:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48505 * 109.47278 * 264.75186 * 3 2 1 5 5 H 1.48507 * 109.47401 * 24.75087 * 3 2 1 6 6 H 1.48499 * 109.47280 * 144.75014 * 3 2 1 7 7 C 1.37877 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00019 * 0.51322 * 7 2 1 9 9 C 1.50703 * 120.00048 * 180.50513 * 7 2 1 10 10 H 1.08996 * 110.34178 * 337.27519 * 9 7 2 11 11 C 1.54405 * 110.29787 * 215.15828 * 9 7 2 12 12 C 1.54416 * 102.44463 * 214.92648 * 11 9 7 13 13 C 1.51052 * 105.15036 * 26.12838 * 12 11 9 14 14 C 1.38569 * 131.53266 * 162.96177 * 13 12 11 15 15 N 1.32347 * 119.02712 * 180.02562 * 14 13 12 16 16 C 1.31814 * 120.77009 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.09150 * 180.02562 * 16 15 14 18 18 C 1.52999 * 117.49968 * 8.62280 * 17 16 15 19 19 C 1.53001 * 60.00096 * 252.50961 * 18 17 16 20 20 N 1.31761 * 121.81748 * 0.02562 * 16 15 14 21 21 C 1.32458 * 120.79697 * 359.97438 * 20 16 15 22 22 H 0.96995 * 119.99884 * 0.02562 * 1 2 3 23 23 H 1.08990 * 110.81218 * 333.17472 * 11 9 7 24 24 H 1.09000 * 110.80737 * 96.68994 * 11 9 7 25 25 H 1.09007 * 110.30286 * 145.04386 * 12 11 9 26 26 H 1.08996 * 110.30992 * 267.10440 * 12 11 9 27 27 H 1.07995 * 120.48667 * 359.97438 * 14 13 12 28 28 H 1.09006 * 115.54956 * 154.33549 * 17 16 15 29 29 H 1.08999 * 117.50200 * 0.02562 * 18 17 16 30 30 H 1.09003 * 117.49890 * 145.02288 * 18 17 16 31 31 H 1.08992 * 117.50174 * 252.51056 * 19 18 17 32 32 H 1.08997 * 117.51471 * 107.47965 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6075 1.9825 -1.3942 5 1 1.3955 2.6823 0.5862 6 1 3.4868 1.4748 0.8080 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 -0.0074 9 6 3.5116 -1.1940 0.0120 10 1 3.8934 -0.2497 -0.3761 11 6 4.0536 -2.3746 -0.8224 12 6 5.3227 -2.7792 -0.0413 13 6 5.0665 -2.3422 1.3818 14 6 5.6768 -2.6942 2.5750 15 7 5.2456 -2.1501 3.7018 16 6 4.2510 -1.2851 3.6955 17 6 3.7908 -0.6883 5.0005 18 6 4.6385 -0.9679 6.2431 19 6 3.2789 -1.6493 6.0754 20 7 3.6480 -0.9278 2.5798 21 6 4.0253 -1.4309 1.4140 22 1 -0.4850 0.8400 -0.0004 23 1 3.3355 -3.1941 -0.8460 24 1 4.3070 -2.0511 -1.8320 25 1 5.4658 -3.8590 -0.0855 26 1 6.1953 -2.2658 -0.4450 27 1 6.4917 -3.4027 2.5855 28 1 3.3103 0.2875 4.9278 29 1 5.5292 -1.5833 6.1167 30 1 4.7160 -0.1761 6.9882 31 1 2.4620 -1.3058 6.7099 32 1 3.2746 -2.7132 5.8384 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228124.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:43 Heat of formation + Delta-G solvation = 46.583267 kcal Electronic energy + Delta-G solvation = -15654.560931 eV Core-core repulsion = 13193.750162 eV Total energy + Delta-G solvation = -2460.810769 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25348 -38.78939 -37.06198 -34.76801 -34.29741 -31.15682 -29.84102 -26.16295 -25.33850 -24.09081 -23.24057 -21.70665 -21.04835 -19.29521 -18.60359 -17.61287 -16.47663 -16.09403 -15.85129 -15.30294 -14.94126 -14.79920 -14.71890 -13.99097 -13.71873 -13.25420 -12.90996 -12.67431 -12.41410 -12.32655 -12.00162 -11.88487 -11.64884 -11.62301 -11.46279 -11.36822 -11.04418 -10.81962 -9.90507 -9.68801 -8.34520 -6.38586 0.02653 0.30996 1.26143 1.33503 1.44163 2.31678 2.63197 2.82407 3.00628 3.14465 3.34671 3.68491 3.89137 3.90472 3.95501 4.11763 4.15904 4.30438 4.50420 4.65430 4.74276 4.81811 4.89377 4.97436 5.00293 5.12546 5.19437 5.29792 5.34530 5.39953 5.52082 5.67145 6.18982 6.24061 6.64714 7.27747 7.35860 8.82198 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.010804 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.352762 B = 2590.958751 C = 3425.668192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.029 3.971 3 Si 0.941 3.059 4 H -0.255 1.255 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.032 0.968 9 C 0.041 3.959 10 H 0.058 0.942 11 C -0.103 4.103 12 C -0.057 4.057 13 C -0.229 4.229 14 C 0.152 3.848 15 N -0.532 5.532 16 C 0.318 3.682 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.150 4.150 20 N -0.540 5.540 21 C 0.164 3.836 22 H 0.266 0.734 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.206 0.794 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -3.659 6.200 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.179 1.179 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.021 3.979 10 H 0.075 0.925 11 C -0.141 4.141 12 C -0.095 4.095 13 C -0.233 4.233 14 C -0.013 4.013 15 N -0.246 5.246 16 C 0.052 3.948 17 C -0.150 4.150 18 C -0.163 4.163 19 C -0.188 4.188 20 N -0.254 5.254 21 C 0.018 3.982 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.222 0.778 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.535 -3.150 7.041 15.578 hybrid contribution -0.431 0.576 -0.823 1.093 sum 13.104 -2.574 6.218 14.731 Atomic orbital electron populations 1.70022 1.08147 1.28071 1.51998 1.25804 0.95286 1.02610 0.93266 0.85822 0.79171 0.79226 0.79201 1.17912 1.21665 1.18872 1.20926 0.89889 0.92886 1.50253 0.94988 1.18988 0.94923 0.97782 0.86200 0.92454 1.22352 0.95950 0.96685 0.99110 1.20923 0.98627 1.02891 0.87013 1.22695 0.99227 1.01504 0.99880 1.23230 0.97203 0.95323 0.85533 1.68148 1.14318 1.11305 1.30833 1.22525 0.88507 0.90705 0.93070 1.20681 1.08439 1.00890 0.85022 1.23060 0.94777 1.03064 0.95444 1.23015 0.99248 0.97422 0.99108 1.67390 1.30049 1.28857 0.99103 1.23417 0.89603 0.89866 0.95297 0.92479 0.92263 0.88495 0.87879 0.87645 0.77756 0.86610 0.87618 0.85685 0.86142 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.03 1.72 5.47 84.65 0.46 2.19 16 3 Si 0.94 46.82 26.91 68.60 1.85 48.67 16 4 H -0.25 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.26 -13.13 6.95 99.48 0.69 -12.44 16 7 C -0.50 -29.15 8.86 25.60 0.23 -28.92 16 8 H 0.03 2.07 7.97 -2.91 -0.02 2.04 16 9 C 0.04 1.90 2.45 -11.66 -0.03 1.87 16 10 H 0.06 2.67 5.44 -2.39 -0.01 2.66 16 11 C -0.10 -3.64 6.58 31.55 0.21 -3.43 16 12 C -0.06 -1.55 6.76 30.44 0.21 -1.34 16 13 C -0.23 -8.09 6.20 -19.63 -0.12 -8.21 16 14 C 0.15 4.73 11.31 84.69 0.96 5.69 16 15 N -0.53 -18.94 9.35 -187.87 -1.76 -20.70 16 16 C 0.32 13.05 7.31 138.75 1.01 14.06 16 17 C -0.13 -4.38 6.23 -11.54 -0.07 -4.45 16 18 C -0.13 -3.06 10.01 30.59 0.31 -2.75 16 19 C -0.15 -4.03 10.23 30.60 0.31 -3.72 16 20 N -0.54 -26.37 10.34 -175.63 -1.82 -28.19 16 21 C 0.16 7.53 6.67 42.66 0.28 7.82 16 22 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.06 2.23 7.85 -2.39 -0.02 2.22 16 24 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.21 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.12 3.98 8.14 -2.38 -0.02 3.96 16 29 H 0.11 2.62 7.54 -2.39 -0.02 2.60 16 30 H 0.13 2.28 8.14 -2.39 -0.02 2.27 16 31 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -74.34 271.97 3.43 -70.91 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.10 Total: 10.47 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.76 Total: -21.21 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.27 Total: -108.84 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.85 Total: 48.67 kcal Total: -74.34 3.43 -70.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228124.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.496 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds