Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38131 * 120.03157 * 265.00080 * 10 9 7 12 12 C 1.38264 * 120.07075 * 179.97438 * 11 10 9 13 13 C 1.38308 * 120.14472 * 0.02562 * 12 11 10 14 14 C 1.38088 * 120.07509 * 0.02562 * 13 12 11 15 15 C 1.38866 * 120.03991 * 84.71899 * 10 9 7 16 16 N 1.39854 * 120.07218 * 0.02562 * 15 10 9 17 17 C 1.36440 * 125.84370 * 270.02749 * 16 15 10 18 18 N 1.28255 * 114.55187 * 179.97438 * 17 16 15 19 19 C 1.46974 * 110.20300 * 359.97438 * 18 17 16 20 20 C 1.47290 * 125.83620 * 89.71513 * 16 15 10 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.07998 * 119.96815 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.92958 * 179.97438 * 12 11 10 26 26 H 1.08004 * 119.96534 * 179.97438 * 13 12 11 27 27 H 1.07999 * 120.03480 * 179.97438 * 14 13 12 28 28 H 1.07995 * 122.72242 * 359.95740 * 17 16 15 29 29 H 1.08997 * 110.54762 * 118.59599 * 19 18 17 30 30 H 1.08993 * 110.55155 * 241.26637 * 19 18 17 31 31 H 1.09003 * 110.70121 * 298.42636 * 20 16 15 32 32 H 1.08997 * 110.70256 * 61.64413 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.3422 -3.2320 1.1923 12 6 4.8027 -4.5357 1.1932 13 6 4.9368 -5.2258 0.0021 14 6 4.6114 -4.6142 -1.1924 15 6 4.1419 -3.3068 -1.1961 16 7 3.8053 -2.6865 -2.4036 17 6 2.5744 -2.6984 -2.9920 18 7 2.5074 -2.0570 -4.1006 19 6 3.8159 -1.4742 -4.4297 20 6 4.7175 -1.9031 -3.2542 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6803 -0.8889 23 1 3.8746 -0.6798 0.8911 24 1 4.2391 -2.6958 2.1241 25 1 5.0591 -5.0160 2.1259 26 1 5.2972 -6.2439 0.0061 27 1 4.7167 -5.1535 -2.1222 28 1 1.7255 -3.2070 -2.5595 29 1 4.1897 -1.8795 -5.3700 30 1 3.7485 -0.3877 -4.4825 31 1 5.0928 -1.0321 -2.7169 32 1 5.5412 -2.5227 -3.6087 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261228181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 63.792970 kcal Electronic energy + Delta-G solvation = -15822.353800 eV Core-core repulsion = 13362.289300 eV Total energy + Delta-G solvation = -2460.064500 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02109 -38.18375 -33.57801 -32.72471 -31.44204 -29.50233 -28.78851 -27.39173 -23.19213 -22.67065 -21.44798 -20.54456 -19.66401 -17.27325 -16.80483 -15.76677 -15.38768 -14.46001 -14.30518 -13.91301 -13.80621 -12.96730 -12.85430 -12.36681 -12.05033 -11.95485 -11.85580 -11.76060 -11.30221 -11.11237 -10.74637 -10.46552 -10.12225 -10.01157 -9.45190 -9.42195 -8.59649 -8.39132 -7.98460 -7.42745 -6.09700 -4.08520 1.67055 1.88012 3.21203 3.26643 3.34153 3.34774 3.63571 4.16567 4.39201 4.98498 5.21252 5.27426 5.30912 5.37356 5.39412 5.52086 5.71503 5.84505 5.90843 6.02462 6.13863 6.25399 6.45555 6.55008 6.69871 6.84412 6.90333 6.94087 6.97419 7.33948 7.41881 7.65229 8.26407 8.44602 8.55255 8.92517 9.50990 11.02964 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.012161 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.292357 B = 2301.899165 C = 3194.926591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.026 4.026 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.140 4.140 14 C -0.115 4.115 15 C 0.143 3.857 16 N -0.591 5.591 17 C 0.389 3.611 18 N -0.591 5.591 19 C 0.026 3.974 20 C 0.082 3.918 21 H 0.264 0.736 22 H 0.022 0.978 23 H 0.025 0.975 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.181 0.819 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -6.950 -1.975 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.091 0.909 9 C -0.018 4.018 10 C -0.028 4.028 11 C -0.137 4.137 12 C -0.134 4.134 13 C -0.159 4.159 14 C -0.135 4.135 15 C 0.052 3.948 16 N -0.309 5.309 17 C 0.093 3.907 18 N -0.317 5.317 19 C -0.104 4.104 20 C -0.042 4.042 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.043 0.957 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.198 0.802 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.390 -6.559 -2.683 12.577 hybrid contribution 1.006 0.931 0.631 1.509 sum 11.397 -5.628 -2.052 12.875 Atomic orbital electron populations 1.69872 1.06133 1.26954 1.50284 1.24913 0.94649 0.98762 0.94366 0.86883 0.80361 0.84137 0.78591 1.20242 1.21208 1.19181 1.20734 0.87708 0.94474 1.51625 0.90945 1.18743 0.97840 0.88165 0.97068 1.20684 0.92205 0.98302 0.91596 1.21020 0.99966 0.94899 0.97817 1.21122 0.99757 0.94808 0.97684 1.20811 1.03209 0.99603 0.92254 1.21271 0.99813 0.94319 0.98114 1.17091 1.02189 0.91294 0.84230 1.45192 1.09521 1.55012 1.21207 1.24585 0.87617 0.90483 0.88050 1.74232 1.20169 1.20417 1.16881 1.23002 0.89904 1.00756 0.96700 1.22620 0.93595 0.95538 0.92425 0.92581 0.95984 0.95688 0.85937 0.86549 0.86542 0.86598 0.80204 0.90589 0.90428 0.91405 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.51 -13.88 9.64 -34.44 -0.33 -14.21 16 8 H 0.07 2.16 7.98 -52.49 -0.42 1.74 16 9 C 0.02 0.44 3.86 -29.03 -0.11 0.33 16 10 C -0.03 -0.52 5.09 -104.43 -0.53 -1.06 16 11 C -0.12 -2.07 9.68 -39.61 -0.38 -2.46 16 12 C -0.12 -1.68 10.04 -39.55 -0.40 -2.08 16 13 C -0.14 -1.95 10.04 -39.61 -0.40 -2.34 16 14 C -0.12 -1.78 9.97 -39.39 -0.39 -2.17 16 15 C 0.14 2.62 5.75 -83.71 -0.48 2.14 16 16 N -0.59 -10.92 2.14 -114.78 -0.25 -11.17 16 17 C 0.39 7.68 12.11 -90.91 -1.10 6.58 16 18 N -0.59 -11.92 11.60 -61.71 -0.72 -12.63 16 19 C 0.03 0.44 8.06 -3.14 -0.03 0.41 16 20 C 0.08 1.32 7.48 -2.97 -0.02 1.30 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.02 0.53 6.27 -51.93 -0.33 0.20 16 23 H 0.02 0.58 7.11 -51.93 -0.37 0.22 16 24 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 25 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.18 3.49 8.06 -52.49 -0.42 3.07 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.12 7.56 -51.93 -0.39 0.73 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -30.77 275.04 -9.04 -39.81 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.06 Total: 0.75 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -4.27 Total: -11.50 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.19 Total: -50.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.77 -9.04 -39.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.608 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds