Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38131 * 120.03157 * 265.00080 * 10 9 7 12 12 C 1.38264 * 120.07075 * 179.97438 * 11 10 9 13 13 C 1.38308 * 120.14472 * 0.02562 * 12 11 10 14 14 C 1.38088 * 120.07509 * 0.02562 * 13 12 11 15 15 C 1.38866 * 120.03991 * 84.71899 * 10 9 7 16 16 N 1.39854 * 120.07218 * 0.02562 * 15 10 9 17 17 C 1.36440 * 125.84370 * 270.02749 * 16 15 10 18 18 N 1.28255 * 114.55187 * 179.97438 * 17 16 15 19 19 C 1.46974 * 110.20300 * 359.97438 * 18 17 16 20 20 C 1.47290 * 125.83620 * 89.71513 * 16 15 10 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.07998 * 119.96815 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.92958 * 179.97438 * 12 11 10 26 26 H 1.08004 * 119.96534 * 179.97438 * 13 12 11 27 27 H 1.07999 * 120.03480 * 179.97438 * 14 13 12 28 28 H 1.07995 * 122.72242 * 359.95740 * 17 16 15 29 29 H 1.08997 * 110.54762 * 118.59599 * 19 18 17 30 30 H 1.08993 * 110.55155 * 241.26637 * 19 18 17 31 31 H 1.09003 * 110.70121 * 298.42636 * 20 16 15 32 32 H 1.08997 * 110.70256 * 61.64413 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0140 -2.6147 0.0010 11 6 4.3422 -3.2320 1.1923 12 6 4.8027 -4.5357 1.1932 13 6 4.9368 -5.2258 0.0021 14 6 4.6114 -4.6142 -1.1924 15 6 4.1419 -3.3068 -1.1961 16 7 3.8053 -2.6865 -2.4036 17 6 2.5744 -2.6984 -2.9920 18 7 2.5074 -2.0570 -4.1006 19 6 3.8159 -1.4742 -4.4297 20 6 4.7175 -1.9031 -3.2542 21 1 -0.4850 0.8400 -0.0004 22 1 3.8752 -0.6803 -0.8889 23 1 3.8746 -0.6798 0.8911 24 1 4.2391 -2.6958 2.1241 25 1 5.0591 -5.0160 2.1259 26 1 5.2972 -6.2439 0.0061 27 1 4.7167 -5.1535 -2.1222 28 1 1.7255 -3.2070 -2.5595 29 1 4.1897 -1.8795 -5.3700 30 1 3.7485 -0.3877 -4.4825 31 1 5.0928 -1.0321 -2.7169 32 1 5.5412 -2.5227 -3.6087 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261228181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 46.026457 kcal Electronic energy + Delta-G solvation = -15823.124214 eV Core-core repulsion = 13362.289300 eV Total energy + Delta-G solvation = -2460.834914 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40477 -39.51470 -35.43417 -34.19685 -33.17887 -30.86995 -30.19401 -29.03161 -24.95326 -24.00609 -22.81015 -22.06031 -21.10234 -18.96621 -18.61316 -17.11538 -16.78682 -16.16603 -15.77509 -15.34486 -15.19387 -14.75641 -14.28159 -14.06166 -13.68727 -13.42805 -13.26168 -13.08839 -12.90772 -12.56359 -12.40890 -12.05192 -11.95064 -11.69665 -11.43210 -10.89754 -10.79621 -9.65432 -9.37220 -8.83453 -8.30435 -6.32232 0.41079 0.59585 1.28631 1.29489 1.39415 1.69999 2.28342 2.30383 2.89178 3.05129 3.64756 3.87013 4.08159 4.13768 4.21429 4.30692 4.42254 4.57646 4.61557 4.74356 4.81762 4.96462 5.04429 5.06391 5.17434 5.25792 5.51010 5.55412 5.61244 5.67610 5.90799 6.07938 6.25358 6.71112 6.84780 7.09525 7.30139 8.85479 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.012161 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.292357 B = 2301.899165 C = 3194.926591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.497 4.497 8 H 0.034 0.966 9 C 0.029 3.971 10 C -0.066 4.066 11 C -0.131 4.131 12 C -0.107 4.107 13 C -0.123 4.123 14 C -0.113 4.113 15 C 0.126 3.874 16 N -0.593 5.593 17 C 0.379 3.621 18 N -0.621 5.621 19 C 0.025 3.975 20 C 0.083 3.917 21 H 0.264 0.736 22 H 0.014 0.986 23 H 0.024 0.976 24 H 0.122 0.878 25 H 0.153 0.847 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.170 0.830 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.743 -8.284 -1.805 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.535 4.535 8 H 0.052 0.948 9 C -0.008 4.008 10 C -0.067 4.067 11 C -0.150 4.150 12 C -0.125 4.125 13 C -0.142 4.142 14 C -0.132 4.132 15 C 0.036 3.964 16 N -0.311 5.311 17 C 0.083 3.917 18 N -0.348 5.348 19 C -0.105 4.105 20 C -0.040 4.040 21 H 0.073 0.927 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.140 0.860 25 H 0.170 0.830 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.093 -7.903 -2.500 15.496 hybrid contribution 0.183 1.200 0.591 1.350 sum 13.276 -6.703 -1.910 14.994 Atomic orbital electron populations 1.70022 1.07909 1.27806 1.52544 1.25759 0.95387 1.02557 0.94463 0.85892 0.79840 0.79732 0.78618 1.20318 1.20757 1.17125 1.20919 0.90063 0.92728 1.49812 0.94809 1.18498 0.94854 0.91102 0.96351 1.20534 0.95515 0.97057 0.93634 1.21158 1.00499 0.96485 0.96857 1.21497 0.97957 0.93359 0.99705 1.21315 1.00692 1.01055 0.91094 1.21508 0.98878 0.92947 0.99890 1.17325 1.03073 0.92565 0.83485 1.45309 1.09338 1.55021 1.21416 1.24485 0.88157 0.90780 0.88318 1.74180 1.22405 1.20928 1.17313 1.23121 0.88682 1.00438 0.98217 1.22743 0.93888 0.95698 0.91668 0.92651 0.96739 0.95823 0.86027 0.82971 0.82389 0.84530 0.81317 0.87854 0.91012 0.92145 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.44 0.30 -58.90 16 2 C 0.02 0.93 5.47 84.65 0.46 1.39 16 3 Si 0.93 45.17 27.47 68.60 1.88 47.05 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.50 -28.10 9.64 25.60 0.25 -27.85 16 8 H 0.03 2.12 7.98 -2.91 -0.02 2.09 16 9 C 0.03 1.38 3.86 29.10 0.11 1.49 16 10 C -0.07 -2.61 5.09 -19.74 -0.10 -2.71 16 11 C -0.13 -4.40 9.68 22.25 0.22 -4.19 16 12 C -0.11 -2.72 10.04 22.29 0.22 -2.49 16 13 C -0.12 -2.85 10.04 22.25 0.22 -2.63 16 14 C -0.11 -3.12 9.97 22.40 0.22 -2.89 16 15 C 0.13 4.49 5.75 38.17 0.22 4.71 16 16 N -0.59 -21.59 2.14 -517.06 -1.11 -22.70 16 17 C 0.38 15.28 12.11 180.45 2.18 17.46 16 18 N -0.62 -25.26 11.60 -349.13 -4.05 -29.31 16 19 C 0.02 0.81 8.06 86.70 0.70 1.51 16 20 C 0.08 2.56 7.48 86.64 0.65 3.21 16 21 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 22 H 0.01 0.70 6.27 -2.39 -0.01 0.68 16 23 H 0.02 1.10 7.11 -2.39 -0.02 1.08 16 24 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 25 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 26 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 27 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.17 6.95 8.06 -2.91 -0.02 6.92 16 29 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 1.95 7.56 -2.39 -0.02 1.93 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -68.65 275.04 3.43 -65.23 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.05 Total: 11.64 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.36 Total: -13.00 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -4.86 Total: -110.91 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -68.65 3.43 -65.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261228181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.252 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds