Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33405 * 126.26872 * 2 1 4 4 C 1.30897 * 109.87011 * 180.02562 * 3 2 1 5 5 N 1.35027 * 109.37543 * 0.02562 * 4 3 2 6 6 C 1.37068 * 133.12312 * 179.97438 * 5 4 3 7 7 C 1.34669 * 120.55971 * 180.02562 * 6 5 4 8 8 C 1.40820 * 120.62027 * 359.71451 * 7 6 5 9 9 C 1.35875 * 119.76599 * 0.54389 * 8 7 6 10 10 C 1.50702 * 120.41009 * 179.75975 * 9 8 7 11 11 C 1.53001 * 109.47327 * 264.72178 * 10 9 8 12 12 C 1.50697 * 109.46995 * 179.97438 * 11 10 9 13 13 H 1.07991 * 120.00449 * 359.72153 * 12 11 10 14 14 C 1.37885 * 119.99686 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.37992 * 126.27142 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.47593 * 269.97247 * 1 2 3 22 22 H 1.08998 * 109.47319 * 29.97670 * 1 2 3 23 23 H 1.09003 * 109.47200 * 149.97783 * 1 2 3 24 24 H 1.08005 * 125.31006 * 179.97438 * 4 3 2 25 25 H 1.07997 * 119.71560 * 0.02562 * 6 5 4 26 26 H 1.07999 * 119.69057 * 179.97438 * 7 6 5 27 27 H 1.07992 * 120.11355 * 180.28095 * 8 7 6 28 28 H 1.08998 * 109.47519 * 144.71880 * 10 9 8 29 29 H 1.09006 * 109.47270 * 24.72110 * 10 9 8 30 30 H 1.08998 * 109.47065 * 59.99424 * 11 10 9 31 31 H 1.09001 * 109.46892 * 299.99688 * 11 10 9 32 32 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2962 1.0756 0.0000 4 6 3.5519 0.7060 -0.0006 5 7 3.6220 -0.6424 -0.0015 6 6 4.6698 -1.5262 -0.0028 7 6 4.4455 -2.8540 -0.0041 8 6 3.1311 -3.3595 0.0020 9 6 2.0782 -2.5007 -0.0020 10 6 0.6656 -3.0258 -0.0011 11 6 0.1423 -3.0846 -1.4377 12 6 -1.2700 -3.6102 -1.4367 13 1 -1.7451 -3.8801 -0.5053 14 6 -1.9537 -3.7516 -2.6257 15 7 -1.3753 -3.4225 -3.7601 16 14 -3.7017 -4.4104 -2.6253 17 1 -4.6566 -3.2804 -2.4975 18 1 -3.9582 -5.1339 -3.8966 19 1 -3.8797 -5.3408 -1.4816 20 6 2.3234 -1.1125 -0.0005 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 4.3996 1.3753 -0.0011 25 1 5.6837 -1.1543 -0.0028 26 1 5.2815 -3.5377 -0.0055 27 1 2.9607 -4.4259 0.0055 28 1 0.0322 -2.3639 0.5894 29 1 0.6499 -4.0258 0.4324 30 1 0.7757 -3.7465 -2.0283 31 1 0.1579 -2.0846 -1.8712 32 1 -1.8565 -3.5215 -4.5965 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = 50.946639 kcal Electronic energy + Delta-G solvation = -15530.976533 eV Core-core repulsion = 13070.354974 eV Total energy + Delta-G solvation = -2460.621559 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.69708 -38.57027 -36.72388 -34.77857 -32.59827 -31.52121 -30.84517 -27.62875 -26.61441 -24.36357 -23.45597 -22.56412 -21.07823 -18.59694 -18.19341 -17.63824 -16.85406 -16.49659 -16.43066 -15.60720 -15.11450 -14.64057 -14.37206 -14.00102 -13.89379 -13.41189 -13.23591 -12.93950 -12.85878 -12.60728 -12.44497 -12.23889 -11.79104 -11.71735 -11.24447 -11.12079 -10.90978 -10.53268 -10.13565 -8.24294 -8.14413 -6.28653 -0.03316 0.38619 1.42612 1.43805 1.54547 1.79052 2.09341 2.42400 2.54142 3.16502 3.59646 3.63241 3.86893 3.99335 4.08649 4.16446 4.40963 4.65893 4.72787 4.77462 4.85443 4.93746 4.98929 5.11972 5.16847 5.24151 5.45495 5.52913 5.61032 5.74996 5.80979 5.89561 6.24194 6.40579 6.88032 6.94562 7.40819 8.94381 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034204 B = 0.007096 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.432764 B = 3945.016747 C = 4415.409548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.019 4.019 3 N -0.491 5.491 4 C 0.138 3.862 5 N -0.372 5.372 6 C 0.027 3.973 7 C -0.124 4.124 8 C -0.142 4.142 9 C -0.048 4.048 10 C -0.065 4.065 11 C 0.044 3.956 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.260 1.260 20 C -0.011 4.011 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.254 0.746 25 H 0.211 0.789 26 H 0.188 0.812 27 H 0.144 0.856 28 H 0.069 0.931 29 H 0.075 0.925 30 H -0.013 1.013 31 H -0.008 1.008 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.001 2.354 8.866 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 N -0.206 5.206 4 C -0.136 4.136 5 N -0.043 5.043 6 C -0.091 4.091 7 C -0.144 4.144 8 C -0.163 4.163 9 C -0.050 4.050 10 C -0.103 4.103 11 C 0.007 3.993 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.184 1.184 20 C -0.120 4.120 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.270 0.730 25 H 0.228 0.772 26 H 0.205 0.795 27 H 0.162 0.838 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.005 0.995 31 H 0.010 0.990 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.842 3.281 8.694 15.851 hybrid contribution -0.724 -0.976 -0.549 1.333 sum 12.118 2.305 8.145 14.782 Atomic orbital electron populations 1.20252 0.87153 1.03209 1.02521 1.21113 0.96793 0.87200 1.10236 1.69791 1.01669 1.31004 1.18178 1.25605 0.97358 0.80437 1.10240 1.43057 1.06586 1.08332 1.46341 1.22382 0.92632 0.89521 1.04590 1.21273 0.97960 0.94613 1.00545 1.21300 0.92239 1.00751 1.02008 1.19605 0.98001 0.89430 0.97999 1.20610 0.90286 1.00481 0.98893 1.18870 0.94617 0.94831 0.91024 1.21657 0.99677 1.42970 0.93270 0.91644 1.25952 1.02695 0.95759 0.95201 1.70120 1.39229 1.49595 0.98460 0.85481 0.79372 0.78670 0.77752 1.19912 1.21021 1.18413 1.19419 0.85233 0.94864 1.12483 0.90449 0.91691 0.90707 0.72982 0.77213 0.79502 0.83805 0.91242 0.90671 0.99457 0.98981 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.91 9.22 71.24 0.66 -2.25 16 2 C -0.02 -0.77 7.21 42.26 0.30 -0.47 16 3 N -0.49 -18.23 11.19 -186.14 -2.08 -20.32 16 4 C 0.14 3.95 12.75 180.15 2.30 6.25 16 5 N -0.37 -11.19 2.94 -351.44 -1.03 -12.22 16 6 C 0.03 0.57 10.97 83.06 0.91 1.48 16 7 C -0.12 -2.66 9.97 22.08 0.22 -2.44 16 8 C -0.14 -4.27 9.70 22.35 0.22 -4.06 16 9 C -0.05 -1.82 5.15 -19.74 -0.10 -1.92 16 10 C -0.06 -2.73 4.60 29.85 0.14 -2.59 16 11 C 0.04 2.31 4.31 29.85 0.13 2.44 16 12 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 13 H 0.07 3.48 7.74 -2.92 -0.02 3.46 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.01 -0.41 6.64 38.76 0.26 -0.15 16 21 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 22 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.07 3.33 4.20 -2.39 -0.01 3.32 16 24 H 0.25 4.22 8.06 -2.91 -0.02 4.20 16 25 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.07 2.88 6.10 -2.39 -0.01 2.87 16 29 H 0.07 2.93 8.05 -2.38 -0.02 2.91 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H -0.01 -0.48 6.83 -2.39 -0.02 -0.49 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -73.67 271.27 6.03 -67.64 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 1.12 Total: 8.95 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 5.72 Total: -33.18 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.83 Total: -89.63 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.67 6.03 -67.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.586 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds