Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30109 * 124.94988 * 2 1 4 4 C 1.35785 * 109.64196 * 180.02562 * 3 2 1 5 5 C 1.39746 * 133.60160 * 180.02562 * 4 3 2 6 6 C 1.36606 * 119.88512 * 180.23402 * 5 4 3 7 7 C 1.38776 * 120.66957 * 359.50085 * 6 5 4 8 8 C 1.37858 * 120.45004 * 0.46442 * 7 6 5 9 9 C 1.50697 * 120.15480 * 179.76997 * 8 7 6 10 10 C 1.52997 * 109.47121 * 265.02403 * 9 8 7 11 11 C 1.50697 * 109.47500 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99713 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00276 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99750 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99979 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47086 * 90.00028 * 15 13 11 17 17 H 1.48503 * 109.47354 * 210.00123 * 15 13 11 18 18 H 1.48500 * 109.47097 * 330.00204 * 15 13 11 19 19 C 1.38837 * 119.68906 * 359.78687 * 8 7 6 20 20 N 1.36037 * 124.94757 * 180.02562 * 2 1 3 21 21 H 0.97001 * 126.35332 * 359.95634 * 20 2 1 22 22 H 1.08993 * 109.47159 * 89.97058 * 1 2 3 23 23 H 1.09002 * 109.47006 * 209.97735 * 1 2 3 24 24 H 1.09006 * 109.46969 * 329.97751 * 1 2 3 25 25 H 1.08002 * 120.05286 * 359.94723 * 5 4 3 26 26 H 1.08003 * 119.66110 * 179.71724 * 6 5 4 27 27 H 1.08000 * 119.77565 * 180.25870 * 7 6 5 28 28 H 1.09003 * 109.46908 * 25.01708 * 9 8 7 29 29 H 1.08995 * 109.47511 * 145.02270 * 9 8 7 30 30 H 1.08999 * 109.47234 * 299.99892 * 10 9 8 31 31 H 1.09000 * 109.47460 * 59.99436 * 10 9 8 32 32 H 0.96998 * 119.99123 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0006 5 6 4.7587 1.4296 -0.0004 6 6 5.9532 0.7668 -0.0060 7 6 5.9931 -0.6204 -0.0015 8 6 4.8252 -1.3529 -0.0009 9 6 4.8763 -2.8590 -0.0012 10 6 4.7677 -3.3726 -1.4383 11 6 4.8194 -4.8787 -1.4388 12 1 4.9201 -5.4158 -0.5073 13 6 4.7381 -5.5710 -2.6284 14 7 4.7837 -6.8854 -2.6288 15 14 4.5631 -4.6420 -4.2395 16 1 5.9105 -4.3474 -4.7899 17 1 3.8028 -5.4711 -5.2090 18 1 3.8369 -3.3689 -4.0005 19 6 3.6018 -0.6965 -0.0004 20 7 2.2862 -1.1151 -0.0005 21 1 1.9753 -2.0339 -0.0003 22 1 -0.3633 0.0005 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.7392 2.5094 -0.0005 26 1 6.8759 1.3282 -0.0104 27 1 6.9455 -1.1295 -0.0018 28 1 5.8196 -3.1906 0.4327 29 1 4.0475 -3.2508 0.5883 30 1 3.8244 -3.0410 -1.8724 31 1 5.5965 -2.9808 -2.0279 32 1 4.7261 -7.3723 -3.4657 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232885.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 26.869053 kcal Electronic energy + Delta-G solvation = -15272.850856 eV Core-core repulsion = 12811.185215 eV Total energy + Delta-G solvation = -2461.665641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.09193 -38.68217 -36.10900 -34.53120 -33.01912 -32.20532 -30.61119 -28.45402 -26.94228 -23.42114 -23.18152 -21.97825 -21.40078 -19.10027 -18.58124 -17.77858 -16.56226 -16.32049 -16.29341 -15.52843 -14.92035 -14.71614 -14.50092 -14.10055 -13.97531 -13.51921 -13.37897 -13.02355 -12.79777 -12.70150 -12.39968 -12.15151 -11.85530 -11.72480 -11.45768 -11.38631 -10.91358 -10.82207 -9.25442 -8.93719 -8.34937 -6.39017 0.02996 0.60227 1.30031 1.31490 1.42733 1.79391 2.01993 2.29577 2.91492 3.00235 3.23166 3.67004 4.04821 4.10117 4.33231 4.35322 4.41875 4.61953 4.67600 4.69938 4.70713 4.88176 4.95705 5.04726 5.19461 5.31686 5.37044 5.52086 5.58741 5.62292 5.71528 6.00890 6.21837 6.44659 6.68535 6.89279 7.26073 8.81443 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.007672 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.092726 B = 3648.656436 C = 4203.232967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.280 3.720 3 N -0.530 5.530 4 C 0.022 3.978 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.076 4.076 9 C -0.057 4.057 10 C 0.004 3.996 11 C -0.531 4.531 12 H 0.039 0.961 13 C 0.012 3.988 14 N -0.946 5.946 15 Si 0.944 3.056 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.258 1.258 19 C 0.029 3.971 20 N -0.595 5.595 21 H 0.430 0.570 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.142 0.858 26 H 0.163 0.837 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.008 0.992 31 H 0.015 0.985 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 15.784 4.778 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.013 3.987 3 N -0.253 5.253 4 C -0.096 4.096 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.095 4.095 10 C -0.033 4.033 11 C -0.569 4.569 12 H 0.057 0.943 13 C -0.186 4.186 14 N -0.586 5.586 15 Si 0.768 3.232 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.081 4.081 20 N -0.207 5.207 21 H 0.271 0.729 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.160 0.840 26 H 0.180 0.820 27 H 0.162 0.838 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.169 16.509 4.674 17.920 hybrid contribution 0.154 -1.637 -0.744 1.805 sum -5.015 14.872 3.930 16.180 Atomic orbital electron populations 1.20587 0.80899 1.06156 1.05524 1.24511 0.97392 0.80408 0.96369 1.70369 1.01075 1.28729 1.25115 1.19510 0.92941 0.90685 1.06443 1.20242 0.88997 1.00369 1.01533 1.20958 0.98314 0.93686 1.00243 1.21150 0.97130 0.94556 1.00764 1.19246 0.90463 0.95809 1.02384 1.20348 1.02144 0.89341 0.97667 1.19395 0.96011 0.93902 0.93995 1.21434 1.50049 0.91669 0.93760 0.94295 1.25884 0.94229 0.95483 1.02954 1.70048 1.52205 1.07997 1.28348 0.85746 0.79243 0.79047 0.79118 1.19105 1.20593 1.18250 1.18951 0.85943 0.95302 1.07879 1.43175 1.04655 1.10627 1.62263 0.72945 0.88086 0.87932 0.87581 0.83979 0.81996 0.83837 0.90991 0.92681 0.97374 0.96622 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.51 71.24 0.75 -0.41 16 2 C 0.28 7.68 8.08 137.92 1.11 8.79 16 3 N -0.53 -17.45 11.27 -179.96 -2.03 -19.48 16 4 C 0.02 0.75 7.23 39.45 0.29 1.04 16 5 C -0.09 -2.63 10.05 22.25 0.22 -2.41 16 6 C -0.11 -2.87 9.96 22.02 0.22 -2.65 16 7 C -0.12 -3.49 9.67 22.31 0.22 -3.27 16 8 C -0.08 -2.68 5.14 -19.81 -0.10 -2.79 16 9 C -0.06 -2.26 5.29 29.85 0.16 -2.10 16 10 C 0.00 0.21 4.02 29.85 0.12 0.33 16 11 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 12 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 13 C 0.01 0.70 5.47 84.65 0.46 1.16 16 14 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 15 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 19 C 0.03 1.02 7.00 38.86 0.27 1.29 16 20 N -0.60 -18.01 6.23 -179.23 -1.12 -19.12 16 21 H 0.43 11.58 8.96 -92.71 -0.83 10.75 16 22 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 26 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 27 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.07 2.76 8.05 -2.39 -0.02 2.74 16 29 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 30 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 31 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -71.67 276.57 3.24 -68.43 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.24 Total: 12.83 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 3.96 Total: -30.97 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -2.85 Total: -96.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -71.67 3.24 -68.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232885.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.304 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds