Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34949 * 119.69536 * 2 1 4 4 C 1.40477 * 120.30081 * 179.72383 * 3 2 1 5 5 C 1.36021 * 119.68949 * 0.02562 * 4 3 2 6 6 C 1.40930 * 119.33069 * 359.97438 * 5 4 3 7 7 N 1.32566 * 132.32834 * 180.02562 * 6 5 4 8 8 C 1.33510 * 109.15871 * 179.97438 * 7 6 5 9 9 C 1.35110 * 108.62982 * 0.02562 * 8 7 6 10 10 C 1.50692 * 126.41313 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46886 * 85.98705 * 10 9 8 12 12 C 1.50706 * 109.46923 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99935 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00259 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00310 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46670 * 90.00000 * 16 14 12 18 18 H 1.48500 * 109.47208 * 210.00214 * 16 14 12 19 19 H 1.48494 * 109.47069 * 330.00286 * 16 14 12 20 20 N 1.36481 * 119.69396 * 179.73013 * 2 1 3 21 21 H 1.08994 * 109.47364 * 95.92146 * 1 2 3 22 22 H 1.09005 * 109.46711 * 215.92713 * 1 2 3 23 23 H 1.08998 * 109.46610 * 335.92497 * 1 2 3 24 24 H 1.08007 * 119.85227 * 359.74482 * 3 2 1 25 25 H 1.07997 * 120.15078 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.33363 * 179.97438 * 5 4 3 27 27 H 1.08000 * 125.68713 * 180.02562 * 8 7 6 28 28 H 1.08994 * 109.47180 * 205.98616 * 10 9 8 29 29 H 1.08996 * 109.47384 * 325.98929 * 10 9 8 30 30 H 1.08998 * 109.47291 * 299.99450 * 11 10 9 31 31 H 1.08999 * 109.46955 * 60.00471 * 11 10 9 32 32 H 0.96998 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1723 0.0000 4 6 3.5802 1.1871 0.0058 5 6 4.2664 0.0127 0.0110 6 6 3.5538 -1.2032 0.0109 7 7 3.9479 -2.4689 0.0156 8 6 2.8741 -3.2622 0.0136 9 6 1.7662 -2.4889 0.0069 10 6 0.3386 -2.9714 0.0020 11 6 -0.1184 -3.2267 1.4397 12 6 -1.5463 -3.7086 1.4349 13 1 -2.0748 -3.8219 0.4998 14 6 -2.1776 -4.0059 2.6240 15 7 -1.5339 -3.8684 3.7625 16 14 -3.9478 -4.6025 2.6181 17 1 -3.9703 -6.0842 2.5226 18 1 -4.6178 -4.1770 3.8732 19 1 -4.6623 -4.0206 1.4537 20 7 2.1831 -1.1856 0.0056 21 1 -0.3634 -0.1060 -1.0221 22 1 -0.3633 -0.8322 0.6030 23 1 -0.3632 0.9383 0.4192 24 1 1.6281 2.1033 -0.0042 25 1 4.1128 2.1267 0.0054 26 1 5.3464 0.0119 0.0151 27 1 2.8886 -4.3421 0.0167 28 1 -0.2994 -2.2138 -0.4529 29 1 0.2695 -3.8961 -0.5708 30 1 0.5196 -3.9844 1.8946 31 1 -0.0494 -2.3019 2.0125 32 1 -1.9779 -4.0779 4.5991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261233072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 71.064547 kcal Electronic energy + Delta-G solvation = -15494.162467 eV Core-core repulsion = 13034.413286 eV Total energy + Delta-G solvation = -2459.749181 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.49341 -37.32314 -34.83814 -33.29483 -31.48188 -30.82823 -28.53209 -26.97233 -24.63544 -22.78028 -22.28791 -21.33535 -19.75611 -16.96743 -16.41575 -16.30655 -15.61511 -15.46022 -14.51248 -13.83001 -13.61263 -13.29855 -13.11271 -13.08312 -12.33441 -12.28508 -11.84647 -11.37931 -11.27774 -11.05730 -10.94776 -10.73298 -10.51824 -10.12906 -9.72833 -9.57406 -9.19417 -8.44442 -8.38039 -7.24535 -6.07139 -4.11924 0.99902 1.60810 2.92455 3.26786 3.27436 3.34164 3.36470 3.82085 4.39139 4.51812 4.66216 4.99548 5.01696 5.20492 5.28337 5.58788 5.65378 5.66714 5.77894 5.87810 5.94152 6.15644 6.24167 6.32102 6.47105 6.55423 6.77363 6.87102 7.09221 7.46835 7.57840 7.67409 7.91109 8.25372 8.29414 8.95076 9.53153 11.03515 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.006612 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.469205 B = 4233.436640 C = 4609.287425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.167 4.167 4 C -0.104 4.104 5 C -0.090 4.090 6 C 0.206 3.794 7 N -0.495 5.495 8 C 0.018 3.982 9 C -0.027 4.027 10 C -0.050 4.050 11 C 0.029 3.971 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.360 5.360 21 H 0.080 0.920 22 H 0.106 0.894 23 H 0.084 0.916 24 H 0.144 0.856 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.178 0.822 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.014 0.986 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 9.666 -7.866 13.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 C -0.188 4.188 4 C -0.127 4.127 5 C -0.110 4.110 6 C -0.037 4.037 7 N -0.215 5.215 8 C -0.132 4.132 9 C -0.140 4.140 10 C -0.088 4.088 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.033 5.033 21 H 0.099 0.901 22 H 0.125 0.875 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.195 0.805 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.689 9.315 -7.668 13.795 hybrid contribution -1.704 -0.102 0.226 1.722 sum 4.985 9.213 -7.443 12.850 Atomic orbital electron populations 1.21323 0.87904 1.05964 1.04107 1.20390 0.95479 0.83930 0.99530 1.20505 0.94597 0.96362 1.07369 1.20902 0.93738 0.97941 1.00160 1.20121 1.00124 0.87995 1.02777 1.20862 0.80211 0.94768 1.07860 1.70657 1.30132 0.98126 1.22624 1.22229 0.86795 0.99775 1.04375 1.21950 0.99705 0.80516 1.11822 1.20587 0.85563 1.00226 1.02441 1.19122 0.96048 0.97172 0.88443 1.21190 0.97457 1.45065 0.92695 0.92439 1.25021 0.98122 0.95506 0.95599 1.69972 1.37044 1.48449 0.97580 0.86584 0.84746 0.79161 0.77464 1.20552 1.21219 1.19826 1.42736 1.08515 1.05581 1.46480 0.90100 0.87525 0.89729 0.83805 0.84605 0.83846 0.80500 0.91565 0.90478 0.95970 0.96785 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.54 36.01 0.31 -1.63 16 2 C 0.11 1.73 6.78 -81.69 -0.55 1.18 16 3 C -0.17 -2.11 9.58 -39.91 -0.38 -2.49 16 4 C -0.10 -1.23 10.07 -39.53 -0.40 -1.63 16 5 C -0.09 -1.29 10.11 -39.36 -0.40 -1.68 16 6 C 0.21 3.79 7.81 -156.04 -1.22 2.57 16 7 N -0.50 -9.86 11.32 -12.78 -0.14 -10.01 16 8 C 0.02 0.35 11.75 -17.93 -0.21 0.14 16 9 C -0.03 -0.53 6.24 -81.47 -0.51 -1.04 16 10 C -0.05 -1.00 4.75 -27.89 -0.13 -1.14 16 11 C 0.03 0.74 4.55 -27.88 -0.13 0.61 16 12 C -0.53 -14.21 9.11 -34.44 -0.31 -14.52 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.36 -6.66 2.94 -54.29 -0.16 -6.82 16 21 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 22 H 0.11 1.89 4.61 -51.93 -0.24 1.65 16 23 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 24 H 0.14 1.34 8.02 -52.48 -0.42 0.91 16 25 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.18 3.01 8.06 -52.49 -0.42 2.59 16 28 H 0.07 1.24 5.43 -51.93 -0.28 0.96 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.01 0.38 7.31 -51.93 -0.38 0.00 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 271.03 15.07 4.08 4.08 Total: -1.00 -31.88 271.03 -8.35 -40.23 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.81 Total: 0.25 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -4.03 Total: -18.09 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.43 Total: -42.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.88 -8.35 -40.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.291 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds