Wall clock time and date at job start Mon Mar 30 2020 03:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34949 * 119.69536 * 2 1 4 4 C 1.40477 * 120.30081 * 179.72383 * 3 2 1 5 5 C 1.36021 * 119.68949 * 0.02562 * 4 3 2 6 6 C 1.40930 * 119.33069 * 359.97438 * 5 4 3 7 7 N 1.32566 * 132.32834 * 180.02562 * 6 5 4 8 8 C 1.33510 * 109.15871 * 179.97438 * 7 6 5 9 9 C 1.35110 * 108.62982 * 0.02562 * 8 7 6 10 10 C 1.50692 * 126.41313 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46886 * 85.98705 * 10 9 8 12 12 C 1.50706 * 109.46923 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99935 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00259 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00310 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46670 * 90.00000 * 16 14 12 18 18 H 1.48500 * 109.47208 * 210.00214 * 16 14 12 19 19 H 1.48494 * 109.47069 * 330.00286 * 16 14 12 20 20 N 1.36481 * 119.69396 * 179.73013 * 2 1 3 21 21 H 1.08994 * 109.47364 * 95.92146 * 1 2 3 22 22 H 1.09005 * 109.46711 * 215.92713 * 1 2 3 23 23 H 1.08998 * 109.46610 * 335.92497 * 1 2 3 24 24 H 1.08007 * 119.85227 * 359.74482 * 3 2 1 25 25 H 1.07997 * 120.15078 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.33363 * 179.97438 * 5 4 3 27 27 H 1.08000 * 125.68713 * 180.02562 * 8 7 6 28 28 H 1.08994 * 109.47180 * 205.98616 * 10 9 8 29 29 H 1.08996 * 109.47384 * 325.98929 * 10 9 8 30 30 H 1.08998 * 109.47291 * 299.99450 * 11 10 9 31 31 H 1.08999 * 109.46955 * 60.00471 * 11 10 9 32 32 H 0.96998 * 120.00311 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1723 0.0000 4 6 3.5802 1.1871 0.0058 5 6 4.2664 0.0127 0.0110 6 6 3.5538 -1.2032 0.0109 7 7 3.9479 -2.4689 0.0156 8 6 2.8741 -3.2622 0.0136 9 6 1.7662 -2.4889 0.0069 10 6 0.3386 -2.9714 0.0020 11 6 -0.1184 -3.2267 1.4397 12 6 -1.5463 -3.7086 1.4349 13 1 -2.0748 -3.8219 0.4998 14 6 -2.1776 -4.0059 2.6240 15 7 -1.5339 -3.8684 3.7625 16 14 -3.9478 -4.6025 2.6181 17 1 -3.9703 -6.0842 2.5226 18 1 -4.6178 -4.1770 3.8732 19 1 -4.6623 -4.0206 1.4537 20 7 2.1831 -1.1856 0.0056 21 1 -0.3634 -0.1060 -1.0221 22 1 -0.3633 -0.8322 0.6030 23 1 -0.3632 0.9383 0.4192 24 1 1.6281 2.1033 -0.0042 25 1 4.1128 2.1267 0.0054 26 1 5.3464 0.0119 0.0151 27 1 2.8886 -4.3421 0.0167 28 1 -0.2994 -2.2138 -0.4529 29 1 0.2695 -3.8961 -0.5708 30 1 0.5196 -3.9844 1.8946 31 1 -0.0494 -2.3019 2.0125 32 1 -1.9779 -4.0779 4.5991 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261233072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:28 Heat of formation + Delta-G solvation = 52.829823 kcal Electronic energy + Delta-G solvation = -15494.953184 eV Core-core repulsion = 13034.413286 eV Total energy + Delta-G solvation = -2460.539898 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.80905 -38.51221 -36.45792 -34.94132 -33.22782 -32.08940 -29.97251 -28.41789 -26.33521 -24.02288 -23.70605 -23.03492 -21.14997 -18.67473 -17.99146 -17.60888 -17.02246 -16.54111 -16.43912 -15.26437 -14.92522 -14.86907 -14.49900 -14.30671 -14.13807 -13.51250 -13.24461 -13.01892 -12.76105 -12.60627 -12.37980 -12.30223 -11.98233 -11.85497 -11.48966 -11.33275 -10.99807 -10.57857 -9.68532 -8.58089 -8.19878 -6.33609 -0.13005 0.38280 1.41607 1.42877 1.53730 1.66300 1.89140 2.41000 2.60449 3.12895 3.33097 3.52040 3.76864 3.94843 4.19064 4.21183 4.41572 4.55520 4.56750 4.66725 4.73975 4.75222 4.98078 5.04555 5.08929 5.21693 5.28354 5.47203 5.61518 5.68681 5.73324 5.81147 6.16367 6.21408 6.82747 6.87583 7.36753 8.91012 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038322 B = 0.006612 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.469205 B = 4233.436640 C = 4609.287425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.114 4.114 6 C 0.196 3.804 7 N -0.532 5.532 8 C 0.005 3.995 9 C -0.060 4.060 10 C -0.030 4.030 11 C 0.043 3.957 12 C -0.539 4.539 13 H 0.069 0.931 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.258 1.258 20 N -0.366 5.366 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.114 0.886 24 H 0.188 0.812 25 H 0.187 0.813 26 H 0.166 0.834 27 H 0.186 0.814 28 H 0.079 0.921 29 H 0.082 0.918 30 H -0.014 1.014 31 H -0.015 1.015 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 12.220 -8.971 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 C -0.167 4.167 4 C -0.099 4.099 5 C -0.134 4.134 6 C -0.048 4.048 7 N -0.253 5.253 8 C -0.144 4.144 9 C -0.173 4.173 10 C -0.068 4.068 11 C 0.005 3.995 12 C -0.577 4.577 13 H 0.087 0.913 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.182 1.182 20 N -0.039 5.039 21 H 0.112 0.888 22 H 0.084 0.916 23 H 0.132 0.868 24 H 0.205 0.795 25 H 0.205 0.795 26 H 0.184 0.816 27 H 0.203 0.797 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.004 0.996 31 H 0.003 0.997 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.191 11.876 -8.796 16.023 hybrid contribution -1.455 -0.692 0.573 1.710 sum 4.736 11.185 -8.223 14.668 Atomic orbital electron populations 1.21278 0.87383 1.05757 1.04323 1.20996 0.96394 0.84030 1.01953 1.21182 0.95350 0.96681 1.03442 1.21540 0.93532 0.98967 0.95909 1.20596 1.01467 0.87238 1.04084 1.21638 0.80679 0.95622 1.06816 1.70616 1.30446 0.99199 1.24994 1.22481 0.87124 1.00481 1.04350 1.21729 0.99117 0.81727 1.14697 1.20244 0.86541 1.00981 0.99039 1.18892 0.95067 0.94404 0.91106 1.21627 0.98320 1.44492 0.93227 0.91303 1.25996 1.02970 0.95603 0.95120 1.70127 1.39191 1.49860 0.98355 0.85421 0.78931 0.78665 0.77882 1.19967 1.21043 1.18161 1.42867 1.08836 1.05895 1.46261 0.88818 0.91639 0.86762 0.79477 0.79531 0.81616 0.79703 0.90236 0.89921 0.99590 0.99672 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 8.54 71.24 0.61 -2.96 16 2 C 0.07 2.06 6.78 41.08 0.28 2.34 16 3 C -0.15 -3.05 9.58 22.06 0.21 -2.84 16 4 C -0.08 -1.44 10.07 22.30 0.22 -1.21 16 5 C -0.11 -2.97 10.11 22.41 0.23 -2.74 16 6 C 0.20 7.18 7.81 134.10 1.05 8.22 16 7 N -0.53 -21.86 11.32 -194.35 -2.20 -24.06 16 8 C 0.01 0.21 11.75 83.72 0.98 1.20 16 9 C -0.06 -2.46 6.24 41.05 0.26 -2.20 16 10 C -0.03 -1.25 4.75 29.85 0.14 -1.11 16 11 C 0.04 2.26 4.55 29.85 0.14 2.40 16 12 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 13 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 14 C 0.00 0.05 5.46 84.65 0.46 0.52 16 15 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 16 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 20 N -0.37 -13.62 2.94 -325.68 -0.96 -14.58 16 21 H 0.09 2.23 8.03 -2.39 -0.02 2.21 16 22 H 0.06 2.37 4.61 -2.38 -0.01 2.36 16 23 H 0.11 2.32 8.00 -2.39 -0.02 2.30 16 24 H 0.19 2.27 8.02 -2.91 -0.02 2.25 16 25 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 26 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 27 H 0.19 6.80 8.06 -2.91 -0.02 6.78 16 28 H 0.08 3.07 5.43 -2.39 -0.01 3.05 16 29 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 30 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H -0.02 -0.87 7.31 -2.39 -0.02 -0.89 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.90 271.03 5.08 -67.82 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.12 Total: 10.19 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 4.81 Total: -27.93 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -2.87 Total: -95.41 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -72.90 5.08 -67.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261233072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.651 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds