Wall clock time and date at job start Mon Mar 30 2020 03:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34664 * 119.72119 * 2 1 4 4 C 1.40814 * 120.61890 * 179.73292 * 3 2 1 5 5 C 1.35882 * 119.76946 * 0.53849 * 4 3 2 6 6 C 1.40965 * 119.17551 * 359.73654 * 5 4 3 7 7 C 1.37998 * 133.70983 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.26960 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47381 * 89.99396 * 8 7 6 10 10 C 1.50698 * 109.47381 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99723 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00095 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99987 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00240 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46616 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47114 * 119.99334 * 14 12 10 17 17 H 1.48498 * 109.46994 * 239.99805 * 14 12 10 18 18 N 1.33402 * 107.46125 * 179.97438 * 7 6 5 19 19 C 1.30902 * 109.86798 * 0.02562 * 18 7 6 20 20 N 1.35028 * 109.37664 * 359.97438 * 19 18 7 21 21 H 1.09002 * 109.47152 * 269.72799 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.72900 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.72881 * 1 2 3 24 24 H 1.07998 * 119.69047 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.11803 * 180.27192 * 4 3 2 26 26 H 1.08003 * 120.41179 * 179.76282 * 5 4 3 27 27 H 1.09001 * 109.47242 * 209.99509 * 8 7 6 28 28 H 1.09003 * 109.47388 * 329.99804 * 8 7 6 29 29 H 1.09006 * 109.47379 * 300.00566 * 9 8 7 30 30 H 1.09003 * 109.46857 * 60.00313 * 9 8 7 31 31 H 0.97005 * 120.00200 * 180.02562 * 13 12 10 32 32 H 1.08002 * 125.31286 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1695 0.0000 4 6 3.5826 1.1916 0.0056 5 6 4.2757 0.0228 0.0001 6 6 3.5676 -1.1961 -0.0057 7 6 3.9511 -2.5217 -0.0124 8 6 5.3659 -3.0404 -0.0151 9 6 5.8449 -3.2232 1.4265 10 6 7.2596 -3.7425 1.4238 11 1 7.7665 -3.9237 0.4875 12 6 7.9067 -3.9864 2.6166 13 7 7.2895 -3.7653 3.7567 14 14 9.6605 -4.6295 2.6134 15 1 10.1251 -4.7928 1.2123 16 1 10.5426 -3.6653 3.3187 17 1 9.7077 -5.9421 3.3063 18 7 2.8399 -3.2598 -0.0150 19 6 1.7881 -2.4805 -0.0109 20 7 2.1865 -1.1904 -0.0048 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3633 -0.8876 -0.5180 23 1 -0.3633 0.8924 -0.5096 24 1 1.6251 2.0992 -0.0004 25 1 4.1098 2.1341 0.0100 26 1 5.3557 0.0276 0.0005 27 1 5.4007 -3.9985 -0.5337 28 1 6.0135 -2.3273 -0.5253 29 1 5.8101 -2.2651 1.9452 30 1 5.1974 -3.9363 1.9368 31 1 7.7449 -3.9366 4.5959 32 1 0.7618 -2.8170 -0.0114 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261234186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:41 Heat of formation + Delta-G solvation = 67.801330 kcal Electronic energy + Delta-G solvation = -15174.531775 eV Core-core repulsion = 12714.641090 eV Total energy + Delta-G solvation = -2459.890685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.46781 -37.47197 -34.42047 -33.24211 -31.61429 -30.86418 -28.23570 -26.93353 -24.90543 -22.93272 -22.12359 -21.28004 -19.18784 -17.47808 -16.29734 -16.14497 -15.65387 -15.48900 -14.40364 -14.21109 -13.92141 -13.48061 -13.00619 -12.65825 -12.54265 -12.16173 -11.92313 -11.51041 -11.39236 -11.02964 -10.89948 -10.59536 -10.19675 -9.95843 -9.60343 -9.35089 -9.00446 -8.94237 -8.27321 -6.96674 -5.92067 -3.94733 1.01294 1.54059 2.86033 3.36339 3.42665 3.43818 3.48126 3.71844 4.37156 4.52404 4.79471 4.84703 4.97474 5.09969 5.21547 5.26941 5.41269 5.43505 5.52337 5.80062 5.91400 6.03344 6.26181 6.44797 6.62817 6.74268 6.85536 6.93718 7.24323 7.51913 7.78312 7.92045 8.09635 8.37273 8.49090 9.12873 9.68714 11.19160 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043647 B = 0.005713 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.359774 B = 4899.782849 C = 5174.705793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.066 3.934 3 C -0.134 4.134 4 C -0.150 4.150 5 C -0.048 4.048 6 C -0.015 4.015 7 C 0.052 3.948 8 C -0.032 4.032 9 C 0.031 3.969 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.453 5.453 19 C 0.131 3.869 20 N -0.368 5.368 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.147 0.853 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.014 0.986 30 H 0.019 0.981 31 H 0.259 0.741 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 10.779 -8.048 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.035 4.035 3 C -0.155 4.155 4 C -0.170 4.170 5 C -0.068 4.068 6 C -0.122 4.122 7 C -0.084 4.084 8 C -0.071 4.071 9 C -0.006 4.006 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 N -0.167 5.167 19 C -0.143 4.143 20 N -0.041 5.041 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.157 0.843 25 H 0.150 0.850 26 H 0.164 0.836 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.910 9.855 -7.872 18.049 hybrid contribution 0.805 0.541 0.281 1.010 sum -12.106 10.397 -7.591 17.671 Atomic orbital electron populations 1.20823 0.88411 1.03989 1.03512 1.20136 0.94571 0.84165 1.04664 1.20516 0.94867 0.96175 1.03958 1.20888 0.93487 0.98339 1.04312 1.20622 1.00649 0.89187 0.96384 1.19448 0.82092 0.96775 1.13845 1.21654 0.96088 0.86856 1.03816 1.20175 0.85322 0.99740 1.01847 1.19056 0.95577 0.97165 0.88838 1.21293 0.98562 1.43399 0.92378 0.92441 1.25020 0.98021 0.95755 0.95646 1.69996 1.37099 1.49168 0.97222 0.86544 0.84900 0.78534 0.78074 1.19665 1.21103 1.21065 1.69977 0.97503 1.32994 1.16214 1.24719 1.00300 0.77031 1.12230 1.42777 1.07584 1.06337 1.47381 0.90139 0.90965 0.89670 0.84274 0.85049 0.83577 0.91454 0.91888 0.96712 0.96257 0.93142 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.86 36.01 0.36 -0.53 16 2 C 0.07 0.83 6.79 -81.52 -0.55 0.27 16 3 C -0.13 -1.54 9.57 -39.87 -0.38 -1.92 16 4 C -0.15 -1.93 10.07 -39.45 -0.40 -2.33 16 5 C -0.05 -0.78 10.10 -39.39 -0.40 -1.17 16 6 C -0.02 -0.29 6.74 -84.09 -0.57 -0.86 16 7 C 0.05 1.11 6.46 -82.00 -0.53 0.58 16 8 C -0.03 -0.73 5.71 -27.88 -0.16 -0.89 16 9 C 0.03 0.86 4.95 -27.88 -0.14 0.72 16 10 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 N -0.45 -9.36 11.19 -10.19 -0.11 -9.48 16 19 C 0.13 2.17 12.12 -90.05 -1.09 1.08 16 20 N -0.37 -5.98 2.94 -58.24 -0.17 -6.15 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.53 7.51 -51.93 -0.39 0.14 16 23 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 24 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 25 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.20 2.39 7.77 -52.49 -0.41 1.98 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -34.50 279.51 -8.77 -43.27 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.14 Total: -3.00 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.27 Total: -18.84 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.45 Total: -42.65 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.50 -8.77 -43.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261234186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.072 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds